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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027706 Open in IMG/M |
| Scaffold ID | Ga0209581_1000021 Open in IMG/M |
| Source Dataset Name | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 643573 |
| Total Scaffold Genes | 596 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 418 (70.13%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 10 (100.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Pennsylvania, Centralia | |||||||
| Coordinates | Lat. (o) | 40.7999 | Long. (o) | -76.3402 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000151 | Metagenome / Metatranscriptome | 1897 | Y |
| F001455 | Metagenome / Metatranscriptome | 691 | Y |
| F003315 | Metagenome / Metatranscriptome | 494 | Y |
| F006635 | Metagenome / Metatranscriptome | 368 | Y |
| F025606 | Metagenome / Metatranscriptome | 201 | Y |
| F027630 | Metagenome / Metatranscriptome | 194 | Y |
| F043112 | Metagenome | 157 | Y |
| F069492 | Metagenome / Metatranscriptome | 124 | Y |
| F070483 | Metagenome | 123 | Y |
| F089584 | Metagenome / Metatranscriptome | 109 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209581_1000021150 | F006635 | AGGAG | VPGKRAVLGSVLLLLAAWWRLRAETPQPWKLTKDSAALVGDAKLRDEIFDALNAAEKSGTDPRITHFNVKAATAFEKDGKERIVVGGNVEYEVPEGIHGETSLLNHVTALYGPETTRKDVRFIAFFAQQCGGGASCGDCRDYQLATTDWEHLLVACGQAGDRSVKVTRFADQIVCERNFPEVEAGKIPLAPEELQRLVKSAQEARRGGVTLFTTTRHTGAAALSFSGKVYRAAGADDAAFHYRYPIGGLLQQAMTERDYFLRAIVVTGEEGTWPVVNYRDRQYGYEASSFNHAAGKAPIVLILANGRGQYRMTTFEAALPSAFSTADFMPEALKKFLESHAGK |
| Ga0209581_100002123 | F025606 | GGAGG | MAAKQVILYFDDQKDALRFALAAGSVMSGEDETDAAEKRSLIQETQRASRILLDDTGNASSRAE |
| Ga0209581_1000021400 | F070483 | AGGAGG | VLKRALVAVVLMLLSGLAAAQNPKITLFAGYSYGNTNYAPGPRSNLNGWEASIEGVRLKPWLTLVADGSANYGWNAFPISCVTVPVCTPAVPNSRAKEYTLLGGPQIAKWYGNFRPFVRLMGGATRTNVATPGFFDSSTNWTVAGGGGVDYKWRGPFGFRVQADYLRTNLFGLTQNMVRASTGFVIRF |
| Ga0209581_1000021402 | F069492 | GGA | MGSTMPSIGHGGPATRSPRVQFAHTTPAILRVHSGSRVRGKLQVVSMTGGLLSLSTPLARGSQAKLMFLTEVGTVLGTAEMLASISGTLQPFRFVGLDDDHERRLRHVIQASLDRKRREQGSIVSDRAW |
| Ga0209581_1000021449 | F000151 | GAGG | MEVGRTEFSSGNKGMPGSNDPHVMEVVRQAHEELRQLMRQRADVMKRIGTVKQTIVGLANLFGDEVLNEELLELVDRKANGRQPGFTKACRMVLMEANRPLGAREVCELIQQKVPPILARHKDPLASVTTVLNRLVEYGEARTLVRENGRRAWQWAADPDAPANSKLPRA |
| Ga0209581_1000021541 | F027630 | GGCGG | VIYNRAVIWPGSRWLAGALTLLLGAALRAQTPGAGGENSPQPGDPLLVTCGEKPPLASHAMKGEVLVAPDGKHRAYSEVEATALATQRGNGFAGPLCVNTSRLYVSADSGDFQLRFLQEPADVETGNSLRLVDWSSDGRRLLAELAEWQYEQPGVTHSILVYDSRYGTFQQPDLPHLLAKLYDRECGFNFRVLGFAGKGAIALEAQPLTPEEEEVLGLSNCAKKKTYFEMDRATESLISVPEMPKLQHNAKAEAAKP |
| Ga0209581_1000021545 | F003315 | GGAG | MSLVVKLEDDLGEHGEWVILNGIIPIEDASFSVLRGIDPFGKTVFNHLQAEAFLAEWERAKERVKDESQSEAWQKVKDMALACRSDRDLYLKFIGH |
| Ga0209581_1000021582 | F089584 | GAGG | MAIFDETYRVIAVESQSLVVRGNTSGEILTIVNNDPEVPIREEDYPVGQLIALSDPSQQWAN |
| Ga0209581_100002187 | F043112 | AGGAG | MSKNHYSTKPKRRNRSGKRKDSQRIAANMAKIRERESSAAGTK |
| Ga0209581_100002198 | F001455 | AGG | MAKSSLKLRILYGEGDAEVATTQAASMQKAGHQVTLAVGRKEIEAALKKDAFDLVILGPTLTRNDRHHLPYMVKKSHEGTRVLVLHADGGRHPYVDTATDTGRTIEQILETIASMMAQQAAAAPR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |