NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000041

Scaffold Ga0209581_1000041


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000041 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)504766
Total Scaffold Genes463 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)376 (81.21%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (83.33%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000526Metagenome / Metatranscriptome1049Y
F007854Metagenome / Metatranscriptome343Y
F013999Metagenome / Metatranscriptome266Y
F016583Metagenome / Metatranscriptome246Y
F016649Metagenome / Metatranscriptome245Y
F017036Metagenome / Metatranscriptome243Y
F017625Metagenome / Metatranscriptome239Y
F018762Metagenome233Y
F048185Metagenome / Metatranscriptome148Y
F055579Metagenome / Metatranscriptome138Y
F066643Metagenome / Metatranscriptome126Y
F079059Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_1000041120F017036N/AMTRLRVEIPVRLTTLAPAPLFAEQSHTLVVNPQGCGVKLSKALEAGTRVLLDGLPGGAQATARVANCLPLGSDGKAYLLGLALENPGNVWGIQKTPADWVTEEIAPPVPVAPAEDPVKKKNWPYSMFSAKGEAHPGRK
Ga0209581_1000041123F016583GGAMAQAPQLQRQRRGARVKLGGSILALLQLQNRRQVRTRLNQLSANGGLLQLEKPLDEGIQVEVLFHVGSTTVRSQAEMLFPMWATKGCLQPFRFRDLEDATRQALEQELSLLLKASPASASDDASLP
Ga0209581_100004116F079059GGAGGVAAEILSVAVFVPLPGREEEGLATVRELSSVLEAGGYSRDRLYRGSEGEYILVRFWKSEGARRGALEDPEAQRRWARLAHEIRILKVHDSLEEIPL
Ga0209581_1000041183F000526AGGAGMGDFVGLAAVVMFFAVPITAIVTYGWYKVSLLRTNERVAALARGGNVPMEPELPAAARSRRAGILLVAAAIGYVVTFALIARVEPDAWMAASFGAIPFTLGLGFFVDSALVRRDLQASA
Ga0209581_1000041356F055579GGAGGMSNDAYTHYVVLNETILGEARIIEKCNEWISLAFVKLGVGSPKPFNDYAFVENRTLVPKTVN
Ga0209581_1000041362F007854GGAGMNTLIANQYGRVQGEVVGGTGLTLAVAAQTPRRESVQLQTRIDSVEQLLHLLAIMRAVERRIEQFQLRDAKSQQPTEPESVFDETSCAEGDLFSSNGNSKNKIYGRFDQFLVYEQVDQGRLRVFFAVRDEAKRVARFDLHPGEVLAFHALAKRALFAIDEVDLMLRDELSLNVNLNVCGGGLRFELDTPLWRSKFAVTQANDLATLAVFTRRAVNQEKAVPVRFGIDANQFSLRKRNDGQVVAEFQHQGALEKITLTTLQVLELEILVQYALGRAFEPASAALRSLLPPPESVTAAQIA
Ga0209581_1000041373F018762AGGAGMRQLRRTVALAGMVLAITLIVPVAAHAIFGTMPVIDWTAVARIGEQIGVSRDTLNTLGLYVQQYNQINAGVQDGVALARGRQLRGLMNQVVGSEFPEFQELQRDFRNVLIDPSTIRQDLENSYGVTKGDFPVSRKKRIDAADATATLGLFDASRMELVSEQEELDANEIEQRAAAASPGGAAKLSAAANGALLRSQAYNQRLLARLMRLQALSIARENSLEKEQEQTRQDQVTAVSNMIGSMKLSYGIGDRAGR
Ga0209581_1000041376F013999AGGAGGMSRILTGARRLASCALALLTSTLLLVMPAFAQVGGDRVSGFLSNSLSYAQGLGIFAAGFLVIWAVANVARERPSGKQWAGAGGSLLLSSLLQLLRTFAG
Ga0209581_1000041377F066643GGAGMPNKENNCKCVVCQVERSLLDSLSTQIARTHFQALAANHPVLNHYDSPTDVIARLHQHERVETDNHNAWNGILHALVQGLADRTTEDIGQQLLLVAYTPAIHKAYREICQRFPSLCPEDIAQQAAVCFLEAARSPEMHRMNGQLPLALVNRFRQSLFRWAMGEMRQALPDEEIPADVPEPQSTNFEGGVLLEHFLSKARTLGILSASECELIRKFHCEGFQPEELREGKDSPSGIALYYRVQRAVHRLRRIGAGGSIKASKTTPPTDTTHSQSKKVLGRRSNFPGSCAFRNSEKGFSPELSDVPQTEPDISQVPA
Ga0209581_1000041380F017625N/AMSRNKRREISEGEFLGLAKSHLSEDFPNPERIGCPADSDLTRMAEHPIEARDAKVSKHLMRCSPCFKRYQEILASLRQQSS
Ga0209581_1000041382F016649GGAGMRDKRLLFLFGCVVLLIAIGCNSRANVSGIWKGSIEASEKGGKNKWQGPAELTLNQNGDAVTGTLVFTHPQGGRVQVPIASGVVSKDTVTFSGQNQFPMGSLELTFHGTVAGTSITGTADMTSRSMLIGPVVNTASISLAKQ
Ga0209581_100004186F048185AGGAGGMRSGAPEPKSSVVSPSTAKSRPLHESRTFWVLTAYGISGLALFGVIAYYFSDFISH
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