NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209581_1000497

Scaffold Ga0209581_1000497


Overview

Basic Information
Taxon OID3300027706 Open in IMG/M
Scaffold IDGa0209581_1000497 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen15_06102014_R2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)81778
Total Scaffold Genes86 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)75 (87.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007854Metagenome / Metatranscriptome343Y
F053166Metagenome141Y
F055579Metagenome / Metatranscriptome138Y
F071061Metagenome / Metatranscriptome122Y
F093554Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0209581_100049711F007854GGAGMNILICNQYGRVQGEVGGTGLTLAVTAQTPRRESVQLQTRIDSIEQLLHLLAIMRAVERRIEQFQLRDAKATQSAEPEGAFDDSICTDGELFSSNGNSKNKIYGRFAQFLIYEQVEQGRLRVFFAVRDEAKRVARFDLHPGEVQAFHALAKRALFACEQVDLLLRDDLSLSIGLNVSDHGVRFEAHTPIWHSQFAITKANDLATLAVFARRSVNQEKTIPVRFGDDANHFSLRKRNDGQVVAEFEHEGSTEKITLSTLQLLELEILAQYALHRAFEPVSVPLRNHLPPQSATAAQIA
Ga0209581_100049717F055579GGAGGMPEDSNGYTHYVVLNETILGEARIIEKCNECISLAFVKLGIGSSRPFNDYAFVENRALVPKILN
Ga0209581_100049728F053166AGGAGGVSFIKKPAEMVTREFRLEEPLAETLDSYAKFIGSTPDHVVASALRFVFWKDKEFDRLQKEQRKARKTSQPAQVKKS
Ga0209581_100049744F071061GGAGGVRDDLRCVCHICQVEDHLFDVLAEPPGNSRFLALAAISPVLAKFTNISELLAYLHSPRTGDYDCSDAGLTLTALVAARATACDSELIHSVLVLAFAPTIHRTYTEVCAWFRELEPADIGQQILAFFLELVASAATENLAGVLPIALSRSLRKASFRWAEKEQRALLKRQDETQTGTDGSERAAEPAFEHVSVLNDFLDYCTRQGLLSGFEREILLRFKVDGLTHKEIQNRHTVLTDQAVRLRVHRIMQRLQEAALSLSTRTGSANHGSRQITPLPVKKSEDGMKRFSLKHSTDFLPISKSRGQLSLDSSRASGEGQ
Ga0209581_100049765F093554GGAGGMRVKSFTYQKSVFGTYYKRSLLNLTKMDDHIAKMLSDGWEILTQTSHTGDRRILRPFAKRDTITVSFKKA
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