NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209188_1000310

Scaffold Ga0209188_1000310


Overview

Basic Information
Taxon OID3300027708 Open in IMG/M
Scaffold IDGa0209188_1000310 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130625_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)51092
Total Scaffold Genes72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (80.56%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000952Metagenome / Metatranscriptome822Y
F005200Metagenome408Y
F053841Metagenome / Metatranscriptome140Y
F098536Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0209188_10003101F005200GGAMDPITIFAACKAAHAGIKECVELYNEFKEDGKDLSGIVTDISQHLGKFFTHNEEFKVAEKEAQKVPLPKNISINEEAMNRVLRQEQMQQMETDLREMIIYQVGMPGLWSKFADMRVVVQKEREKVEREQKKPWQKLRTDVDFLLKSTKY
Ga0209188_100031022F000952AGGAGGMSSDAEQKGELVRQHKRIAMGEKLDGTSLKGKGDTKPTKPQGGLAQAKKK
Ga0209188_100031036F053841AGGAMTRAIIKSAMAISELAYSLDNISTDDKKQIEDYTDAEILHEAKYVLGLFTDPNESHWNAEDLRGENGESQQKWAKAEVRKLQAFIKKYS
Ga0209188_100031055F098536AGGAMQNKYVSEEDIKQVFFQSKMDNVEGYDFDELLDFADKVIMFASFNIARVERDMCIGFVKTLNVEVAQALKDKRGNL
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