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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027710 Open in IMG/M |
| Scaffold ID | Ga0209599_10000189 Open in IMG/M |
| Source Dataset Name | Subsurface microbial communities from deep shales in Ohio, USA - Utica-3 well 1 S input2 FT (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 43138 |
| Total Scaffold Genes | 75 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 64 (85.33%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (75.00%) |
| Associated Families | 12 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Deep Subsurface → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Ohio, USA | |||||||
| Coordinates | Lat. (o) | 39.849 | Long. (o) | -81.036 | Alt. (m) | Depth (m) | 2500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000369 | Metagenome / Metatranscriptome | 1222 | Y |
| F000376 | Metagenome / Metatranscriptome | 1216 | Y |
| F000671 | Metagenome / Metatranscriptome | 945 | Y |
| F001176 | Metagenome / Metatranscriptome | 756 | Y |
| F001280 | Metagenome / Metatranscriptome | 732 | Y |
| F001464 | Metagenome / Metatranscriptome | 689 | Y |
| F002060 | Metagenome / Metatranscriptome | 597 | Y |
| F003582 | Metagenome / Metatranscriptome | 478 | Y |
| F004006 | Metagenome / Metatranscriptome | 457 | Y |
| F028150 | Metagenome / Metatranscriptome | 192 | Y |
| F037227 | Metagenome / Metatranscriptome | 168 | Y |
| F080044 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209599_1000018913 | F001176 | GAG | MSDDGTGMVTPPNSEPSGAVTSQEVGRKKPSQGKFHSGPRPPTKIDRNKHGIRRETTFGPKKTKPKKV |
| Ga0209599_1000018914 | F001280 | AGGAG | MCIECGCESVGSESGIANIPGGILDTSRDGEAGLTLNMTATPEQRESFINE |
| Ga0209599_1000018922 | F037227 | AGG | MANNQVTVLEGIIEDISIELYQKLWNAIPAEEQNEESSKAIGLNSKETTLFIIQRFMDKFNAAAEELKDK |
| Ga0209599_1000018927 | F002060 | N/A | MTIDPISLIIPICTALLGGVGASLLSGRREYKKEQIRQKEREQDHLKIELKDLKLALYKLERDLTEWKDKYYGAIQELISVKSELEETLIKLTFIDHKIDDMNRLD |
| Ga0209599_1000018928 | F000671 | AGGA | MEKILCYSCNKSKNKLNVRKSALLPINLLMCESCISGKLEPRWVLILSGRQNGSDSVKEFIIKKKYLGQEITAAELLV |
| Ga0209599_1000018934 | F003582 | N/A | MNNYRIKIEVDAEVQAFSENDAVDYVNDIFGIDEEIKNIKVVSVKEK |
| Ga0209599_1000018938 | F028150 | AGGGGG | MNWLKKRAIAILSENFTFLGFFVAWVVLEGSAKTVVGYVTLASVAIWFMTIGIREKAEKEEE |
| Ga0209599_1000018944 | F000376 | AGGA | MSEYQDRAKECKCCGKHVPLPTVLKEYNGIVMCPTTFANVVEYKRIWKNLGVRPQGNVRKHFSEYVQQIVEQTIDKNEDGSLQ |
| Ga0209599_1000018946 | F000369 | N/A | MELELADHFDRMNKVVSELLKGNNPTQISTITGLQRKDVVELIDEWKQVVRNDNTARERAKEAINGADQHYAMLIKEAWKTVEDADQAGQLNVKATALKLIADIEGKRIGMLQEVGLLDNAEIASQVAESERKQEVLVKILKEVTAQCPKCKMEVAKRLSQITGVVESIVIEDAGGS |
| Ga0209599_1000018957 | F080044 | GAGG | MPNLDEFLNEDKEEIKHYDLEDLPGVRACSKCDEDVSGAKWDPIDLVMSWRCSKGHETIFKVQ |
| Ga0209599_1000018960 | F004006 | AGGA | MTDDIEGLVTSISINQVLVAILEEHGKLTVPTLKFLESSAAEKELVIDYDETIPSFTFSLREKDGNE |
| Ga0209599_1000018967 | F001464 | GGA | MDDQQRIECICQMVRSKRQRTRKKLLYFFLNGKIHKVIRTSKARDELVAWCYPDKKRVMYAYSQVKKNMGNAYSIKNVCEILNRHRVTVEEYILQGKIKEPQRVYPISNPDSTWYKFMFSESDIYDLHQFILDAGYTKDFPSKAELTALLKHNLILYTKTDEGSFVPVWKAE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |