NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209328_10034720

Scaffold Ga0209328_10034720


Overview

Basic Information
Taxon OID3300027727 Open in IMG/M
Scaffold IDGa0209328_10034720 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1551
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae → Acidisoma → Acidisoma cellulosilyticum(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018019Metagenome / Metatranscriptome237Y
F039840Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209328_100347203F039840GGAGMKIPFLSCISLLIMVACTTQQSSTDPLSATWTGAGQNAGPTHVGGSAGNTTTAFDGTYQGISNRSASTAGTGKKTFEANVTGCQPFDAPPTLTVTNGLAQFQAMGVTFAGYVTPQGHLTMHSGYGATATGQTKPVDVDENFDGIIDYQTHVLRAKVSSVNCTYNVAWQRVA
Ga0209328_100347204F018019N/AASSITFIGPNGWKYSRHIVDPTVLDKVKVGDKVDITWNTDVTVAVQ

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