NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209190_1004479

Scaffold Ga0209190_1004479


Overview

Basic Information
Taxon OID3300027736 Open in IMG/M
Scaffold IDGa0209190_1004479 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140205_XF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9055
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (19.05%)
Novel Protein Genes9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families9

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000957Metagenome / Metatranscriptome821Y
F003714Metagenome / Metatranscriptome472Y
F005588Metagenome / Metatranscriptome395Y
F006659Metagenome / Metatranscriptome367Y
F010765Metagenome / Metatranscriptome299Y
F015597Metagenome253Y
F019449Metagenome / Metatranscriptome229Y
F021107Metagenome / Metatranscriptome220Y
F021297Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0209190_100447910F003714N/AMPNAHHPYTETLTFAGRVLPLKRPMAEFAARRLQAILPQIAALNAAGKSQGDAAAALETTVTTLRHWLDITGTTWINVKRRGPYSSRA
Ga0209190_100447912F010765N/AMSALPTPTPDDLPVSFRDIGLGVMIGSASWLIRYFCSTEKQTLGYIFRRTATAGLTSVLVGMAIKGYLSSESLAFAAAGCAGYASPELVDALLARIKAMKVKSPTKGE
Ga0209190_100447913F019449N/AMTTETFTTIVVPGIASLAYFSASVACFIAHRPALAVMWLCYSIANICLLSTVLRK
Ga0209190_100447916F021107N/AMITLILIAVAFAGGFYAGVKNAKSSKVEKAVDIIRALKGK
Ga0209190_100447919F021297N/AMSCNNQVTVSQGNTFAATFTWTPGATGPANLLATTITSTLEDRDFNEYAMAVTIAGDGLSFTVAYAGSTASWALGLARWDIKFVFPGSTVSRSEIFRVNVIDSVTV
Ga0209190_10044793F015597N/AMSDPIEDAFKSLHQGNLLSAKDARIKQLEERLEGMREAGDAIWYCVRHANRVDPAELIEAIEDWQEARNHG
Ga0209190_10044795F006659N/AMKKDTKLPTEYRIIADSSYIVLPDQKVARLLTPTVRNGVTYYNLFVPDYTRMSLADIEATIKAGEVTKSTDSK
Ga0209190_10044798F000957N/AMSNFQHLEGMRNLILEIYEINERILTGDILSPKAAIASTNVKKILNHYHEALHEDGAVKVSLQAYVAAGGWVGIQYSYELDGFEVAGSQVPRRV
Ga0209190_10044799F005588N/AMITTIRPNKMPTLWWLFPWAYARTLHMSANALKAYADRQDQALEIFRGVIEIKDAEIRMLKQRVRDQDDAIIKGTAITPDAYPHE
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