NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209038_10054478

Scaffold Ga0209038_10054478


Overview

Basic Information
Taxon OID3300027737 Open in IMG/M
Scaffold IDGa0209038_10054478 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1198
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000496Metagenome / Metatranscriptome1076Y
F097957Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209038_100544782F000496GGAMRCSATGRHAAGHCVIEHEELLVHNWRVTQLTRLGVPGPLAETYADRIDWHQVARLVHSGCPPRLALRIVR
Ga0209038_100544783F097957N/AMVITQQRTENMEYVRSLLRQKQPGFSVALELAVILVEQQLRSPDMPRDIGASEPHGR

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