NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209085_1007760

Scaffold Ga0209085_1007760


Overview

Basic Information
Taxon OID3300027741 Open in IMG/M
Scaffold IDGa0209085_1007760 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5484
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043750Metagenome155Y
F057335Metagenome / Metatranscriptome136N
F086599Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0209085_100776012F057335N/AMSTGEEVVARIKEQDELTLTLDRPVVIMISQQGLAFGAFIPTMESVDGVTINKSAIVAIGPCLEKVSSEYSNAVSPVKTVSKTGLIV
Ga0209085_10077604F086599N/AMIKDNNLEFFTKRAQLDKRARQIQTEIIEERKIHMNEVTIDILHEIIREAQQRAERENG
Ga0209085_10077605F043750AGAAGMSTDTALILGIFLLLTLGATIGWWLSSRFYESKYKELLDASIEVNRITIKSLEQTMREITERNDKEQNDQR
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