Scaffold Ga0209085_1032554

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209085_1032554

Scaffold Ga0209085_1032554

Overview

Basic Information
Taxon OID	3300027741 Open in IMG/M
Scaffold ID	Ga0209085_1032554 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2466
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)		Depth (m)	2
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209085_10325542	F016963	GAGG	MIEILPDQTTHEQLLNRVRSLARELAEAKAALAAAETRENNLIDRIRAGL
Ga0209085_10325543	F005502	AGG	VRALLSILAILGITSGHASNVMIDCRPEAKRIDVKKMKVRITGYWPGEDEWSSRFQSSTGTRLRAGRHCAVDPDIIPLWSKIKILNGKREWVAVDTGTAVKSKKASGGKLPVIDVFAASEAQFNAMRLPKVATVEVSK
Ga0209085_10325545	F020510	GGAGG	VTLRDLLCMFSARVIGTYTPAQYAQQVIIARNNRMRWGMGQW

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