NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209689_1159419

Scaffold Ga0209689_1159419


Overview

Basic Information
Taxon OID3300027748 Open in IMG/M
Scaffold IDGa0209689_1159419 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1064
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038167Metagenome166N
F090170Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209689_11594191F090170GAGMPAIVFAMISVAIELLYFDYMVGRGMLDEAFSIPIGGVKIPLSIALFFSLANAIVLLTLWMTVFENTAFVMAGPDRRVRRILYPLRMVKAAAIVLTPFTI
Ga0209689_11594192F038167GAGVIGWLNKGRWTLVALALILLASVVSSGSAAAPSPQENVSLFAGNKLVVSSSQQAIKSVFVRGNLTAANVSNVNYPSKIFTLTANSTQLYTLNIWLSYPSNYNTSIIINDPIAGSNNLYTSYYVSAGDLNLTIFADFQPAPNSGGGVPLSWSSFFGWFSQFGNAFPLWIKVLYTILG
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