NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209084_1000278

Scaffold Ga0209084_1000278


Overview

Basic Information
Taxon OID3300027749 Open in IMG/M
Scaffold IDGa0209084_1000278 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)49252
Total Scaffold Genes74 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)64 (86.49%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022576Metagenome213Y
F046152Metagenome / Metatranscriptome151N
F057849Metagenome135N
F089764Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209084_100027836F089764GGAGMSIIPTLDIYSLSDADLVDEAAKLDLTIKALTKKLDEAKSWIRARQLDEIYGTNFKAVISTPSIRWTLDTDRVKKEMGETWYTERCKISQPSPAVSFKPYMTLDQIKIA
Ga0209084_100027845F046152AGGAMTISRRKFLTSLTALVATPAVIRYSGVMAVNPVQASPYVIVHGLDLSGKMVLHKFWDPISANQFAGTPEFHNMVQVTSWDYGVPSKDMLPKSNHWQGMVGLDDRTVDQIIEDRILKQEQQRQAWLNDPAWTIYGIIGPELIGPASSKNIRATTQFNENGPIRKPWEMI
Ga0209084_100027846F022576GGAMTIDLNEHMERKKQERHIAAYDAIGEAVDGMSVGTVLHILSAFTRAVLDNMGEPDRSQAAMVFSSVIMESKTQPEAPVQ
Ga0209084_100027850F057849AGGMGKIQEWYDSWLLEQAKQAVADKRFKPKPPKYVFPNEIVNALREQARDCEECERDPITGISLWPKETTLEWQAADLIDERFAEIRYYEKLREDMIELWVQMRDLLGGDYDETLA
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