NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209448_10012721

Scaffold Ga0209448_10012721


Overview

Basic Information
Taxon OID3300027783 Open in IMG/M
Scaffold IDGa0209448_10012721 Open in IMG/M
Source Dataset NameBog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2713
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil → Bog Forest Soil Microbial Communities From Calvert Island, British Columbia, Canada

Source Dataset Sampling Location
Location NameCalvert Island, British Columbia, Canada
CoordinatesLat. (o)51.62Long. (o)-128.09Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000789Metagenome / Metatranscriptome891Y
F029158Metagenome189Y
F069092Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209448_100127211F000789AGGAGGMEKRTSFAQMKAEQARMTESWKAEGRLSEAWVVADPEIVEIFSAGVAFGLAMASRGRRDPAYSPDEWRKALREAVEKAAALEEKLERAKGAMLNNKDED
Ga0209448_100127212F029158AGGAGMSPHSAIERILELSAEAQIKRREAAEDSPAFHNLTGAIVAYGKALGLLSKLKEAQTEPYSTN
Ga0209448_100127217F069092N/ARNRRMVNSPSSMTSEQKILAALVRIERKLDDMGRRVKAVQQDVNRVKRIVRG
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