Basic Information | |
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Taxon OID | 3300027797 Open in IMG/M |
Scaffold ID | Ga0209107_10000143 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from dead zone in Lake Erie, Canada - CCB hypolimnion July 2011 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 41587 |
Total Scaffold Genes | 82 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 62 (75.61%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Erie, Canada | |||||||
Coordinates | Lat. (o) | 41.77 | Long. (o) | -81.73 | Alt. (m) | Depth (m) | 20 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000369 | Metagenome / Metatranscriptome | 1222 | Y |
F000376 | Metagenome / Metatranscriptome | 1216 | Y |
F000868 | Metagenome / Metatranscriptome | 853 | Y |
F001280 | Metagenome / Metatranscriptome | 732 | Y |
F003422 | Metagenome / Metatranscriptome | 487 | Y |
F077310 | Metagenome / Metatranscriptome | 117 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209107_1000014315 | F000369 | AGAAG | MTEIEPSVHFDKMNKVVSELLKGSSATQIATITGMTRKDVLGYIDEWKAVVHNDTNVRDRAREALMGADQHYDMLIKEAWKTVEDADTQGQLNVKSGTLKLIADIEAKRIGMLQAVGVLENNEMASQILENERKQEMLVGILKEVTSNCNHCKIEVAKRLSQITGIVEPIIISQEASDA |
Ga0209107_1000014318 | F000376 | GGAG | MSEYQERAKECKCCTKHVPLPTILKLYNEIVLCPTTYYNVIEYKRIWGSYGSRPPGNIRKHFSEYVQSIVEEKNKVGE |
Ga0209107_1000014341 | F077310 | AGG | MSIDANSVIIVIAASILSGIGTALVNGIKESKREKIRQSEREQDLLKMDLKDLEIKLYKLEKDLAEWRDKYYEALQELIEVKAELEDTLIKLTHIAMHE |
Ga0209107_1000014353 | F001280 | GGCGG | MCIECGCESVGSESGIIPVIVTDVSRDGEAGLTLSMTSTPEQTRQFINE |
Ga0209107_1000014374 | F000868 | AGGTGG | MSFLENENQMVIDATYSEIGEMLVEDWVNANLDEGQLFADYRFAEMSDSNYLKGRFNLFYDLNKGDQYYLEYEEE |
Ga0209107_1000014380 | F003422 | AGG | MYICRQCPQGCGCDIDHTGRIKNPLEKLVNVSGSWYNSSMTNELISSKYTFVCDPDECDCLIELTSSDGFGFPSGVTQLTCPCGRKTTLVSVEHATIQPTTQTKEEPMETETPAVTVPDTYNANLLVTYKVIHGYSDATYETDKVASIEWSLHNGRQSQKQVNMYVSKIDTVKDIITEAYADSDDQETLRSIAEALDIELTRDVEWSATIEVSGTIQLDLLADSDTDVEQEIYDNLYVDSQNGNIEIVDTEVCNVREN |
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