NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209229_10003801

Scaffold Ga0209229_10003801


Overview

Basic Information
Taxon OID3300027805 Open in IMG/M
Scaffold IDGa0209229_10003801 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from dead zone in Sandusky Bay, Ohio, USA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6270
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (62.50%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameSandusky Bay, Ohio, USA
CoordinatesLat. (o)41.474889Long. (o)-82.854137Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F000671Metagenome / Metatranscriptome945Y
F002060Metagenome / Metatranscriptome597Y
F003582Metagenome / Metatranscriptome478Y
F012975Metagenome / Metatranscriptome275Y
F074876Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0209229_1000380110F000473AGGAGMASSLFDDKHFKYGINQFTGEPNKPVFYNQTMAKKIKEIKAPVMGLQMDIAKYPDFLAIKLYEDNFIQYQGTKKEMVIDYVLKVKKVIESFGVRCELVGVPSERVL
Ga0209229_1000380111F074876GGAGLGCLVKEYYEIINIIYIHDLKVYGTIDKMGTYASVVKYTKDGIDYKELIENDEFAIVDEIVFEHVEEEK
Ga0209229_1000380112F000671GAGGMEKILCYSCNKSKNKLNVKKSSLLTINLLMCETCITNKIEPRWVVILAGRSMGPEHVREFVLKKRYIGNEIAASELLI
Ga0209229_1000380113F002060N/AMNLNYTSIIIAISAAILSGMGTAIIAGIRDSRKEKIRQREREQDHLKLELKDLKIKLYQVERDLTEWKDKYYSAIQELIEVKANLEETLIRLSLIDMEFHPDQD
Ga0209229_100038015F003582N/AMNTYRVKIEIDAEVEAFSSEDAVDYANDIFGVDDEVKNVKVVSVKEK
Ga0209229_100038018F012975AGGAVLNLTLKGVEVFIEKSKTKNQESYWDNYDLMIWKQDKSGFTNIKGLFRKDTWGVAERISANNEGIWKLPAKYVKHFK
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