NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209271_10007947

Scaffold Ga0209271_10007947


Overview

Basic Information
Taxon OID3300027845 Open in IMG/M
Scaffold IDGa0209271_10007947 Open in IMG/M
Source Dataset NameMarine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4112
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location
Location NameAtlantic Coast
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009067Metagenome323N
F031501Metagenome / Metatranscriptome182N
F050306Metagenome145N
F077316Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209271_100079471F031501GAGMTSELLDLFEEAKRIIDKQEQLIKLQQSLIKTMQQGLQGVELNELLLKKQLADLQEELMTVTNDYIDVMGGGEKV
Ga0209271_1000794710F009067N/AMKDKSKQVWYLYANDIKELKRECYEIIATLYVQLGQAPEAEIVVQMTNLFCNDLATNYGSMELDEVKFALNKHIRENDGPHFVNVPTWNEALRSYKMTKALKKQTNQIDQYEVYKKRVESFSKAIDKREIKKIGNANNNK
Ga0209271_1000794711F050306AGAAGMSKYYEIKKREDVTVKNMLEIYGKSSKYRKKITWDTLYLITGWTHIQITKDERQK
Ga0209271_100079478F077316GAGMKKQSKGINKRLESWINNRLFKTLNPKDWEIESILYIYNNEKDSNIRGRSEQSKHSSRRN
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