NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209755_10909044

Scaffold Ga0209755_10909044


Overview

Basic Information
Taxon OID3300027864 Open in IMG/M
Scaffold IDGa0209755_10909044 Open in IMG/M
Source Dataset NameCornitermes sp. P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Co191P1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)678
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut → Cubitermes And Nasutitermes Termite Gut Microbial Communities From Max Planck Institute For Terrestrial Microbiology, Germany

Source Dataset Sampling Location
Location NamePetit - Saut dam, French Guiana
CoordinatesLat. (o)5.0626Long. (o)-53.0462Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038732Metagenome165Y
F097586Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0209755_109090441F097586AGGAGVKIGRGVKQGCCLSPILFNLYSDCLTKEALEGFGDFKIGGKIIHTVRY
Ga0209755_109090442F038732N/AAIKELRNKKPAGDNDVPGGVMTKLINTIYETGKWSNDFTEVTMIALKKKPQATKCSGHLTISLIGHTAKIVAKVLRRRKERKIEDVLEEDQFGFRRGKGTRGAAGMLRIISERTSEIDAELCV

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