Basic Information | |
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Taxon OID | 3300027874 Open in IMG/M |
Scaffold ID | Ga0209465_10003215 Open in IMG/M |
Source Dataset Name | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 7082 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (77.78%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil → Tropical Forest Soil Microbial Communities From Panama Analyzed To Predict Greenhouse Gas Emissions |
Source Dataset Sampling Location | ||||||||
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Location Name | Panama: Oeste | |||||||
Coordinates | Lat. (o) | 9.1086 | Long. (o) | -79.8436 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F014323 | Metagenome / Metatranscriptome | 264 | Y |
F031154 | Metagenome / Metatranscriptome | 183 | Y |
F089173 | Metagenome / Metatranscriptome | 109 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209465_100032153 | F089173 | AGGTGG | MTAIALQFPSGRDYPRRSFKRLVLNLINGFREAREISHRYEELSHLSDTQLAARGMRREDLPRIALTGRA |
Ga0209465_100032155 | F014323 | GGAGG | VAARRPKVEGVEIYAMSTKRAVPQLQRELLMAGINSPSGRLRFAKSSAETLAATYAALMSLQRKKLIEPEKQTDPAIMSWKVTKAGKAALAEKPSRR |
Ga0209465_100032156 | F031154 | GGA | MTECTKDIDAAARCAFCGKRLPMVNGELQPWRAPNGQFFCNEFCADDAEEVRFRRHGRAERKAHQRDFFF |
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