NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209283_10206359

Scaffold Ga0209283_10206359


Overview

Basic Information
Taxon OID3300027875 Open in IMG/M
Scaffold IDGa0209283_10206359 Open in IMG/M
Source Dataset NameVadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1305
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: California, Eel River Critical Zone Observatory
CoordinatesLat. (o)39.7291Long. (o)-123.6419Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010022Metagenome309Y
F099704Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0209283_102063592F099704N/AMNVWKIRVKKGNSEVEVAGPSPEVVQKMFEDLVKKYMTKLASSR
Ga0209283_102063593F010022GGAVAFLFGVSNPTGLLFSVPISILNIVIGLVTRSPLGFENKPESENIRLLVDRGVVRASVYEIVFLNSKLILKRLSSVTVTVILALVLAIVGLEVLGIIGALMGGIAGFSLQEFLTQRMRNKIESELQLTSTGNNDLEIKYEGLKEVRLAKNRLYLTTETNSLSISFPRGYSRKMTPMLESIFGSKFETEESIRAAKTAQKENEESQHPRGDRGKLSRR
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