NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209481_10022111

Scaffold Ga0209481_10022111


Overview

Basic Information
Taxon OID3300027880 Open in IMG/M
Scaffold IDGa0209481_10022111 Open in IMG/M
Source Dataset NamePopulus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2823
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location
Location NameUSA: Tennessee
CoordinatesLat. (o)35.8443Long. (o)-83.9607Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081533Metagenome114Y
F090028Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0209481_100221114F081533GGAMPFTEATKITLEAGQAVELYAGVVLPPGSYSGIKAWVREDALGGLISTPSRFRIELTAEQLVSMGAAVQPNQNSEEIDVTEFVRLGLLKPA
Ga0209481_100221117F090028GGAMPVFGYFAIVGAALVALFFVADATLEKGASPVVTSERVGLPKPWQPDPIQTLVSKPAPEPDMTTPEVLAAQPKTAAEAPKKKHVTRKRSPDDHYQQNQAWSRDRDRGPFGFFFGR

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