NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1002379

Scaffold Ga0209400_1002379


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1002379 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14347
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (46.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011648Metagenome / Metatranscriptome288Y
F017467Metagenome240Y
F024503Metagenome205N
F086791Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_100237910F024503GGAMKYLLLFTPFALAACSSFEPPNVSLETDKQAFHMSRAQVILGITECEDAGTRPVVITAKRRINGTMSDVPVEVTCNPRYKIFH
Ga0209400_100237911F086791N/AMSNYLFSMYCGNTYLDVYGYIDKDDPTVGHVGGIDIEDVCTCDTKTSVWEMIHALNFDKFNEQAQMAWSERNDR
Ga0209400_100237917F011648AGGAGMSEQDQDLHSFQQHLERIFKDLENGVFITADEIGDLRYACGLPSPIRNTQVNPVLRDVINDFGNCFGNPLNTFPTMWSKK
Ga0209400_100237924F017467N/ALKNNSDNYLVEWYIAVAKRRGWPEVVKLLAQYPEKEERIKMLIKKRLGK
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