NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209400_1033744

Scaffold Ga0209400_1033744


Overview

Basic Information
Taxon OID3300027963 Open in IMG/M
Scaffold IDGa0209400_1033744 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2814
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028171Metagenome / Metatranscriptome192Y
F050371Metagenome / Metatranscriptome145N
F077290Metagenome / Metatranscriptome117N

Sequences

Protein IDFamilyRBSSequence
Ga0209400_103374410F028171GGAGGMSDHIRAKLEALISDSGMFHAGQQDERLRLCRLIDIRLDDLGKLGRGPIISARRDELLIIRQALRDHP
Ga0209400_10337443F050371N/AMTFKIKGAIFKNTAEKLQQRLGDRYDASKKYPEVDGVFGIKEEDRMALASYIMNAAPNEKGEVPLRVTGYNNTSQSGVKYLGLSIEPDFKTLKAIEEALLAAVPPAAAPVQVVDVSQDDL
Ga0209400_10337444F077290N/AMQCPKCSHSRHRAAITNSRVPDQVVRKRVCEACGHMWFTVEAEVSRYSIGWCSKHQNKPVLRVPVTLELGFVECLPPGRPPLPHYDL
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