NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268322_1001805

Scaffold Ga0268322_1001805


Overview

Basic Information
Taxon OID3300028049 Open in IMG/M
Scaffold IDGa0268322_1001805 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1353
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064345Metagenome / Metatranscriptome128Y
F068340Metagenome / Metatranscriptome124Y
F083626Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0268322_10018051F083626N/ASNGVDLVRSLRKIHTYFVARTFALIEQVQPVFHPVSCSYEMIANAPKYYEGPMGWIGCVRFEKSRCYFVARTFALIAPVHPILHQVSCSYEMIPNAPKHYETHQNMSLGSNGVDQVRLFGKITTXLRGTNFCINCTSSVCFAPNFMQLRNDPKSTQIHRNIPKHYLRVQLSGLGVSIAKNHDVNSWHELLH
Ga0268322_10018052F068340N/AMARTYVLIAPVQYVSCSYETIPNAPKYYKTDRHISLGSNGLDWVRSLRKMSSXLRGTNFCMNXTSSVCFATSFMQLRNDPKCTQIQQNGPKHLFRVQWGGLGAFVAKNDVVIRGTNFCKNXTSSICFATSFMQLRNDPKCTQIQQNRPNH
Ga0268322_10018053F064345N/APNYTQNSYFGVFQSVWVHLGSFRKCMELGAKRGELEQLMQKFVPQNHVGIFHNERTKSTPLDPKLMIWSVLLYLGAFGIVS
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