NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268340_1002300

Scaffold Ga0268340_1002300


Overview

Basic Information
Taxon OID3300028064 Open in IMG/M
Scaffold IDGa0268340_1002300 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1524
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023774Metagenome / Metatranscriptome208Y
F074342Metagenome119Y
F088146Metagenome / Metatranscriptome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0268340_10023001F023774N/ALHQFGAFCTKFRAVAKLFQNAPERRETHPNMSLGSNVVDRERSLQKILTRHRGTNFCINCTTLARFAASFMQ
Ga0268340_10023002F074342N/AMARTFALIAPVWCVLQQVLCNSETVPNAPKQIETHQNMSLWSNGVDREHSLRKILARHRGMKFCINCTSLALLHQVSCTSEMVQKAPERKETHQNMSLGSNSVDRQRSLQTILTRHRGLNFCINCTSLACIAASVGQ
Ga0268340_10023003F088146N/AMSLGKNGEDLERSLQKILTRHRCTNFCINCTSLARFAP
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