Scaffold Ga0302334_1030830

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302334_1030830

Scaffold Ga0302334_1030830

Overview

Basic Information
Taxon OID	3300028235 Open in IMG/M
Scaffold ID	Ga0302334_1030830 Open in IMG/M
Source Dataset Name	Enriched fungal communities from goat fecal pellet, Isla Vista, California, United States - Bagasse, Gen5, Rep 2, Chloramphenicol (External Submission)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1633
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Fungi incertae sedis → Chytridiomycota → Chytridiomycota incertae sedis → Neocallimastigomycetes → Neocallimastigales → Neocallimastigaceae → Neocallimastix	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	34.4149	Long. (^o)	-119.841	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F046107	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302334_10308301	F046107	N/A	MLYXNFPFLTNKKVIKPRSNIFKIDSVVSVKLSPDSSFIELLGRDSPFVEIDDDPVLSLFLISTTSTLLVKFGNLEYLSNNSSNELLMIGI

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