NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268325_100556

Scaffold Ga0268325_100556


Overview

Basic Information
Taxon OID3300028463 Open in IMG/M
Scaffold IDGa0268325_100556 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_17JUL2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1207
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002578Metagenome / Metatranscriptome546Y
F028677Metagenome / Metatranscriptome190Y

Sequences

Protein IDFamilyRBSSequence
Ga0268325_1005561F028677GGAGMNTPDPPHWTLNYRFAAFCTIWVHLGLFGCLTKLGAKRAELVQKFVPRS
Ga0268325_1005562F002578GGAGMNTPDPPHWTLNYRFAAFRTIWVHLGLFGCLRKLGAKRAELVQKFVPRSCIGIFRNERTRSTPLDPKLMFW

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