NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0268315_1004435

Scaffold Ga0268315_1004435


Overview

Basic Information
Taxon OID3300028472 Open in IMG/M
Scaffold IDGa0268315_1004435 Open in IMG/M
Source Dataset NamePhyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_05JUN2017_LD1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)863
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere → Phyllosphere Microbial Comminities From Bioenergy Crops Switchgrass And Miscanthus From Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)42.39Long. (o)-85.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063244Metagenome / Metatranscriptome129Y
F082001Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0268315_10044351F063244N/AKRDMVARTFTLIAPVHYVLQQVSCSYETIPNAPKYYETDRNISLGSNGVDGVR
Ga0268315_10044352F082001AGGMGWIGRDCCKKSKCDFVARTFTLIAAVQYVLQQVSCSYETIPNAPKYYEIDRNISLGWVDGVRWLRKITTRLRDMTFCINCTSSVCFATSFLQLRNDPKCTQILQNAPKH

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