Scaffold Ga0268357_101414

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0268357_101414

Scaffold Ga0268357_101414

Overview

Basic Information
Taxon OID	3300028580 Open in IMG/M
Scaffold ID	Ga0268357_101414 Open in IMG/M
Source Dataset Name	Sewage microbial communities from Oakland, California, United States - Biofuel 10 (Illumina Assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	16115
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (70.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Methanomicrobia → Methanomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Sewage → Sewage Microbial Communities From Oakland, California, United States

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	37.82	Long. (^o)	-122.29	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083634	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0268357_10141411	F083634	GGA	MYIMLKMADQTISLDRIRIGGRVCRLARKLFVTVEHENDRLTLSNEEFGLVVSAETLEEGIAGISEELATLWEVYVDADPANLTADALRLRSNLTSLVPAGVSL

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