NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247828_10041364

Scaffold Ga0247828_10041364


Overview

Basic Information
Taxon OID3300028587 Open in IMG/M
Scaffold IDGa0247828_10041364 Open in IMG/M
Source Dataset NameSoil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1949
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)42.673Long. (o)-77.032Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004806Metagenome / Metatranscriptome423Y
F044065Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0247828_100413641F044065N/APHNPFDDPKLVTELAQAFESIWLVMRAHDPLLDADRAKDLSIEISRKLVELAAAGVTDPTQLRRLALESLPLSPAH
Ga0247828_100413643F004806N/AMGTLDPDSLFRGRGSIGVKLLPPTGDCGMTKLELLYAQKSEKFGEVCAVAARELGYGDLSTLSVEDRIRVEDEARLYVEQWEETVEMRTNFTIRPFTPLRHLLAEYHDICERILDEHEIVACLLAYRKRAQKRRRPASP
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