Scaffold Ga0257139_1070638

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257139_1070638

Scaffold Ga0257139_1070638

Overview

Basic Information
Taxon OID	3300028620 Open in IMG/M
Scaffold ID	Ga0257139_1070638 Open in IMG/M
Source Dataset Name	Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	572
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean

Source Dataset Sampling Location
Location Name	Canada: British Columbia
Coordinates	Lat. (^o)	49.68	Long. (^o)	-124.009	Alt. (m)		Depth (m)	80
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042912	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257139_10706383	F042912	N/A	MKWTPDLVIAFTLIIACVVLIAFRIDSEVKSILTVASGWVFGTQIQTYRAKGNCNAIKGGEK

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