 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300028620 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0046785 | Gp0297566 | Ga0257139 |
| Sample Name | Metatranscriptome of saline water microbial communities from Sakinaw Lake, British Columbia, Canada - sak_2010_1_5_80m (Metagenome Metatranscriptome) |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 135356152 |
| Sequencing Scaffolds | 25 |
| Novel Protein Genes | 27 |
| Associated Families | 21 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| Not Available | 16 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1 |
| All Organisms → cellular organisms → Archaea | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 2 |
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 1 |
| All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Expanding Oxygen Minimum Zones In The Northeastern Subarctic Pacific Ocean |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → lake → saline water |
| Earth Microbiome Project Ontology (EMPO) | Free-living → Saline → Water (saline) |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 49.68 | Long. (o) | -124.009 | Alt. (m) | N/A | Depth (m) | 80 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000344 | Metagenome / Metatranscriptome | 1257 | Y |
| F004178 | Metagenome / Metatranscriptome | 449 | Y |
| F016493 | Metagenome / Metatranscriptome | 246 | Y |
| F019930 | Metagenome / Metatranscriptome | 227 | Y |
| F022812 | Metagenome / Metatranscriptome | 212 | Y |
| F024682 | Metagenome / Metatranscriptome | 205 | Y |
| F026446 | Metagenome / Metatranscriptome | 198 | Y |
| F035608 | Metagenome / Metatranscriptome | 171 | Y |
| F042912 | Metagenome / Metatranscriptome | 157 | Y |
| F046170 | Metagenome / Metatranscriptome | 151 | Y |
| F052683 | Metagenome / Metatranscriptome | 142 | Y |
| F064398 | Metagenome / Metatranscriptome | 128 | Y |
| F071959 | Metagenome / Metatranscriptome | 121 | Y |
| F074370 | Metagenome / Metatranscriptome | 119 | Y |
| F083361 | Metagenome / Metatranscriptome | 113 | Y |
| F083597 | Metagenome / Metatranscriptome | 112 | N |
| F083668 | Metagenome / Metatranscriptome | 112 | Y |
| F088317 | Metagenome / Metatranscriptome | 109 | Y |
| F098292 | Metagenome / Metatranscriptome | 104 | N |
| F099149 | Metagenome / Metatranscriptome | 103 | Y |
| F102405 | Metagenome / Metatranscriptome | 101 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0257139_1004648 | Not Available | 2493 | Open in IMG/M |
| Ga0257139_1004832 | Not Available | 2452 | Open in IMG/M |
| Ga0257139_1006686 | Not Available | 2107 | Open in IMG/M |
| Ga0257139_1009532 | Not Available | 1786 | Open in IMG/M |
| Ga0257139_1012251 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1579 | Open in IMG/M |
| Ga0257139_1015742 | Not Available | 1387 | Open in IMG/M |
| Ga0257139_1017038 | Not Available | 1328 | Open in IMG/M |
| Ga0257139_1018469 | Not Available | 1269 | Open in IMG/M |
| Ga0257139_1022410 | All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium | 1136 | Open in IMG/M |
| Ga0257139_1026672 | Not Available | 1028 | Open in IMG/M |
| Ga0257139_1029800 | All Organisms → cellular organisms → Archaea | 961 | Open in IMG/M |
| Ga0257139_1031703 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter denitrificans | 925 | Open in IMG/M |
| Ga0257139_1039399 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Enterobacter → Enterobacter cloacae complex → Enterobacter hormaechei | 811 | Open in IMG/M |
| Ga0257139_1040038 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 803 | Open in IMG/M |
| Ga0257139_1040638 | All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Opitutae → Opitutales → Opitutaceae → Lacunisphaera → Lacunisphaera limnophila | 796 | Open in IMG/M |
| Ga0257139_1040972 | Not Available | 792 | Open in IMG/M |
| Ga0257139_1047126 | Not Available | 728 | Open in IMG/M |
| Ga0257139_1047377 | All Organisms → cellular organisms → Archaea → TACK group → Candidatus Bathyarchaeota → unclassified Candidatus Bathyarchaeota → Candidatus Bathyarchaeota archaeon | 726 | Open in IMG/M |
| Ga0257139_1050899 | Not Available | 696 | Open in IMG/M |
| Ga0257139_1052446 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium | 684 | Open in IMG/M |
| Ga0257139_1053111 | Not Available | 678 | Open in IMG/M |
| Ga0257139_1070638 | Not Available | 572 | Open in IMG/M |
| Ga0257139_1070785 | Not Available | 571 | Open in IMG/M |
| Ga0257139_1071493 | Not Available | 568 | Open in IMG/M |
| Ga0257139_1087698 | Not Available | 505 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0257139_1004648 | Ga0257139_10046486 | F035608 | LTPLLATVTSIYCPRLPENAALPAVSFFTRGGGSTPYIPGIPEPSVQFDCWANNPIDAREVYRALYDNLQGIQGKVVTVGPPTEIIWSAIEEVQGQDLVDMEIPNYFRTLAFFRFMIKAE |
| Ga0257139_1004832 | Ga0257139_10048323 | F026446 | MKVTGETFSFIQKEKKSRRGKIPKVFKLSGKRTVTGQNSGELYTKKHR |
| Ga0257139_1006686 | Ga0257139_10066861 | F046170 | MIRIQDFGEVAYGGAVTLTSWWDNKRIEEGKIGTKDVFKKASFYTYLGVGLVATLMSVFGWMRRYEVWTEKISTGFLYDLPRFAYDMSKTLSSAGRARTSESAAVREAQRILQQRSTARQLTEGQAQATQRSYQPEFNKTMAW |
| Ga0257139_1009532 | Ga0257139_10095321 | F046170 | MIRIEDFGEIGYGGVVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKALGTTSKRGSESSAVQEAQRILNERMRAKALTQGSGIPAERSYQQEFETVAPHAF |
| Ga0257139_1012251 | Ga0257139_10122512 | F088317 | MPGPEDKVNYPPTPKIPQEELNKTAPKTRKDHYEGIKAPPIPPLEKSQILKAIESGFKVAEESSRYVMTPPPELPYRILSLRTKYVSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDVYASFAYSEFRSAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDERVRIQLYKGLPVYCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPDYK |
| Ga0257139_1015742 | Ga0257139_10157422 | F071959 | MASRNYLINSNDMTLTDKKEYRTKALAAGLERCGQKNIGNVNADIPVLAGIPPANMEARVAEIKAHIETGKWPKTIDQRELAPLTDFVAAAAQDFWLTVALAAVGTVYTCLGLLPAYTFPAGRLMVCYGVSVDAAVLPVSRLIFRRGSAVGNIQAQFDMQPLGPRLETAAFFSEPVVIDPQDPFAIQVLCNIIAGATPVHIDNFLFEIAGAVIA |
| Ga0257139_1015742 | Ga0257139_10157423 | F046170 | MIRIEDFGEIAYGGAVTLTEWWDNKRIDQGKIGTKDVFKKASFYTYLGVGLAATLMSVFGWMRRYERWSEHVSHGFLYDLPRFAYNLTKAMGSSSKRGSGAESRAVQEAQKILQERMSAKALTQGRTAERSYQREFESVAPHAF |
| Ga0257139_1017038 | Ga0257139_10170383 | F074370 | MADKMAEKLAEAKKKMFGAQQPSGKIIILVKGDSLIKSADPKVEVRQQE |
| Ga0257139_1018469 | Ga0257139_10184693 | F102405 | MAQEINLLDPLGVAKMVRGQLNTMAIQANLPQIPEIPSIKMEMAGLPLLNKWAPIPERPGMSRGERAG |
| Ga0257139_1022410 | Ga0257139_10224101 | F022812 | KLAFGPQTLDIAYLPLRHDFLAKNVLMTAQRDFPLGNSQLTAQNQPTPFA |
| Ga0257139_1026672 | Ga0257139_10266722 | F016493 | MGWFSDKVEKFRQVPNPYFFLHIGARFLFGVGLGLLLATWLPVWTGWVFIGAAVLIAIPSTRIIFRG |
| Ga0257139_1029800 | Ga0257139_10298002 | F024682 | LNAEDELISKLKQEIGKTLPPMFSGMAENMLESNKDVIINWLKENKDLVKEVIES |
| Ga0257139_1031703 | Ga0257139_10317031 | F088317 | MPGPEDKFSYPPRPTLTQDDVNKTRPTTRRDAYEGVKTPALPPMDKSQILRAIESGFKEAENPARYVMRPPADLPYRVLPLNTKFYSCNTRHLKEIGAFRTLAPELFGDAGYKLVDDAYASFAYGEFATARARGQFKNAPNCTAREIGTFIATVYDIQNFPIVIAEASDERVRIQLYKGLPIHCPYDVRRGDYRLCAATAGYERELTKLCNPKLRAYLSRTKAIGDDCCELTIEPDPDA |
| Ga0257139_1034368 | Ga0257139_10343681 | F083361 | VNVHLDLSGCTLSTEQQAVVDALNEFLASLPDDDDSDVALRLAMDILEAADVAPQTVLAEAAGFTQARSVRVYKQRLREEGLAGLFDRPIPGRPAVTTQTPVEKAVYQVILSALIEEHALPDDATLAERVNQALRGARVPEAGLVTSSMVETIRLHWDIQRPAITQQLQAAQSSETCETDTVRLGQTHVGGAFILAILLLEAGWLKMAHLLPMAPKYAVTATQWLLTAIFSVIYGVRRAFHLDDVRDIGFALVTGRP |
| Ga0257139_1039399 | Ga0257139_10393991 | F000344 | MRPKHPPAAESGVGKHTARESERVQACATGKERVTSAH |
| Ga0257139_1040038 | Ga0257139_10400381 | F088317 | MPGPEDNVKYPPPPNIPQEELNKTAPKTRTDCYKGIEAPPIPPLEKSQILRVIESGFKEKESIGRYVMTPPPELPYRILSLRTKFVSCNTRHLKEIGAFRTLLPELFGEPGYKAVDDAYASFAYSEFAAAQARGQLKNAPNCTAREIGTYIATAYDIQNFPVTVAEATDDKVRIQLYKGLPIYCPYDVRRGDYRLCAATAAYERELTKLCNPKYRAYLSRTKAIGDDCCELTIELDPDYK |
| Ga0257139_1040638 | Ga0257139_10406382 | F004178 | MRPTAPHAAESSVGKHTARESEAPNVCEWERARGER |
| Ga0257139_1040972 | Ga0257139_10409721 | F019930 | MVKVKAPDQMNPGKVIEGEYPYHTKDSILNLLFIRDLQLSGAELVKQNVLAMKLETCKDDEILLEDEEYNRIKRAIDTFKGFGRNDVGLVTRINEAEVVEVKTK |
| Ga0257139_1047126 | Ga0257139_10471261 | F035608 | MAIEDSNRIIKDYLLACGSLTPLLATVTSIYCPRLPENAALPAVSFFTRGGVNNPYIPGMLEPSVQFDCWAGTPIAARKIYRALYDNLQGIQGKVVTIGPPTEIIWSAIEEVQ |
| Ga0257139_1047377 | Ga0257139_10473771 | F064398 | VKTVTLKKLCVMALCTFLLTLAFSGVGNAAPEETPSVYYLEYGGLKIDIRAPDQAYPGENITVTVKTEAVVPQIYVKYINVDLYGVVNATTEVILDQISHLKNSSLSSHEVQYNIKIPDNISPGLTYGEVSCEWEALGASFEILSSGFVLAYVKNIALEQLQAEYDELNATHQSILQENTELKSGINEDADSTRNLMYVFIATTVVASITVFVLLMRKPKKVWV |
| Ga0257139_1050899 | Ga0257139_10508991 | F083597 | MKQEFVNWKIFIWAIAIILGLFSISYGMIANAQLKAESAYNNIYQIRTDIEVIKTDVSWIKNNI |
| Ga0257139_1052446 | Ga0257139_10524461 | F088317 | VTSADVNKAAPKTRRDHYKGAQAPPMPEMDKSQIMEWVETGKPEDPSRYVMMPPREVPYRKLPLAVKFVSCNTRHLKEIGAFRTMLPEIFGDAGYKAVDDAYASFADGEFRTAQSRGMLKNAPNCSLQEIAAHIRTVYDIQNFPIVIAEADYDNEIVRIQLYKGLPRHCPYDVREGDYRLCAATAGYERELVKMCNPRYRAYLSRTKAIGDDCCELTIDVDPDNK |
| Ga0257139_1053111 | Ga0257139_10531113 | F083668 | WTPDKITAMVLVIGCLALIFTGIDGEVKSILTLSAGWLFGGAYIAAKTK |
| Ga0257139_1070638 | Ga0257139_10706383 | F042912 | MKWTPDLVIAFTLIIACVVLIAFRIDSEVKSILTVASGWVFGTQIQTYRAKGNCNAIKGGEK |
| Ga0257139_1070785 | Ga0257139_10707851 | F099149 | MLVGVLISIMISIVVGVNLIPTILTSINTAKAQATAIGGFSGLSGLMEVLAYVYVAVILLGAVAWIGGQT |
| Ga0257139_1071493 | Ga0257139_10714931 | F098292 | MSDVTRRIERWQKKYSPAQAKATLDLLQEGMRQRYEAATTEMAAMELKVKEVLNAQGVHTTNYVPYLSYARQLWKLGRQQHITGESFAMASEVLLQKWAGRGQDPDVLAAIRTQVFNSPPPAP |
| Ga0257139_1087698 | Ga0257139_10876981 | F052683 | IYRAKIFLETRGGKKMRNILDRKKTLGERSREYFSEKKGIMGPIISVFVLVLIISILSGLTFLFVGQLKSQVSETATGGEDSTAYQAVNDTEAAGATVVGYLPLIFLAIIFGAILTLVLKIILPYINLGQQMGGGF |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |