Scaffold Ga0265336_10000032

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0265336_10000032

Scaffold Ga0265336_10000032

Overview

Basic Information
Taxon OID	3300028666 Open in IMG/M
Scaffold ID	Ga0265336_10000032 Open in IMG/M
Source Dataset Name	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	167925
Total Scaffold Genes	152 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	98 (64.47%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location
Location Name	USA: Seattle, Washington
Coordinates	Lat. (^o)	47.6516	Long. (^o)	-122.3045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F070201	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265336_1000003244	F050419	GGAG	MTNATRPTFLRNFGRGAAARRAPDLADMGTAFALDEALEQGSYDTLPPGESPPPMRAAVPVAPWRLWLGRKLGS
Ga0265336_1000003245	F070201	GGAG	MRTMPLQLLTWGTITSAVGSAVWLSSADQSAMFCSVGYRATSQAMGIVVPTEPTRAGPSAKVPVSGASRQLQASAG
Ga0265336_1000003281	F051255	AGG	MNAAAAITASTSHAANDWARSQTARTMVRAAMNSNAVVYRRTWPSQEAIDLLSELEYDPKLAWNGWLDSTLDLRDGLSVVEVFAPIDEPAALQEFARLRN

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