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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300028675 Open in IMG/M |
| Scaffold ID | Ga0272445_1002622 Open in IMG/M |
| Source Dataset Name | Hot spring sediment microbial communities from Yellowstone National Park, WY, United States - YNP-CB-003-1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12166 |
| Total Scaffold Genes | 32 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 30 (93.75%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Hot Spring Sediment Microbial Communities From Yellowstone National Park, Wy, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wyoming | |||||||
| Coordinates | Lat. (o) | 44.5775 | Long. (o) | -110.7896 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F069506 | Metagenome | 124 | N |
| F080678 | Metagenome | 115 | N |
| F086364 | Metagenome | 111 | N |
| F088087 | Metagenome | 109 | N |
| F092976 | Metagenome | 106 | Y |
| F100012 | Metagenome | 103 | N |
| F104114 | Metagenome | 101 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272445_100262210 | F069506 | GGAGG | MQLEQLTYTEEQIKQAIEEVWQELLQEADAEDYSLEEYLKHYRKYWDDPDFPNDIPEIIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREYTFDGVNVHRFINVAGTVIDYEDIIRLVIKLLDQIQSALADA |
| Ga0272445_100262211 | F100012 | GGAGG | MDREKVLQALREAQAEYNIKDLDNFIRTAWEEGDVLQAQFVAEIVERAVEILFGRHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVTRLAELIEQNLKSRAVE |
| Ga0272445_100262214 | F080678 | GGAGG | MFTRKVDAKTTPIAEVYDDWERIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKFGVTWSFNRDVVRHGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHADV |
| Ga0272445_100262215 | F088087 | GAGG | MLTASDGSVWTPVTVSSAPCEICKRKCKSVVYECVEGKWAGVRVVACPEHVEKAIEQFIAGGEE |
| Ga0272445_100262220 | F092976 | GGAGG | MMVQEILNFKQELRRVSQEFLRKWKKCPKCGARWIDAAWDAESDHEWLIVECRNGHLFRADEEFWLFDYSGRDCESGVYVPSEDCEMEVSGYAG |
| Ga0272445_10026225 | F104114 | AGGAGG | MERLRLWLSMTQDEKFAAAEKELKNATLDIHEDFEEEWSLSRSVEDFAPDGLAELISWAAECLLGLQWQLEWDLDADVEDMFLSKGVTTYWFRVFDPETGCILTRKPNGIPGARFRYCKFIETLGDAVRAVVDLADIIAENLPVVRSQVSLIKEVK |
| Ga0272445_10026229 | F086364 | AGGAGG | MEREKIIAALETAFAEISGAEYEDEPETFAEFLESFAKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAEHSNGSCTVSVVFPILSIDDAVQAVEYLLRSVQQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |