Basic Information | |
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Taxon OID | 3300028712 Open in IMG/M |
Scaffold ID | Ga0307285_10000004 Open in IMG/M |
Source Dataset Name | Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_139 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 246966 |
Total Scaffold Genes | 269 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 181 (67.29%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Colorado | |||||||
Coordinates | Lat. (o) | 38.9206 | Long. (o) | -106.9489 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F003627 | Metagenome / Metatranscriptome | 476 | Y |
F016854 | Metagenome / Metatranscriptome | 244 | Y |
F031439 | Metagenome / Metatranscriptome | 182 | Y |
F049823 | Metagenome | 146 | Y |
F056088 | Metagenome / Metatranscriptome | 138 | Y |
F064160 | Metagenome / Metatranscriptome | 129 | Y |
F081191 | Metagenome / Metatranscriptome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0307285_10000004111 | F049823 | AGGA | VPSQPVQGAYEVADGVVPEEKIDDALRLLHLDLLQRGAAAEELSQWLWGAHWFPHLNERPEILALAESLPQEWRTGRICDPQILLQFPHAGPEPEITFHLDQEPAWAEGRTYLRIVGVPLSSWRGDNGGLLVETAEGPAPVEADPGDAIMMTPDLPHSGGINRSGKLRYGVYFRFLADD |
Ga0307285_10000004183 | F081191 | GGAGG | VTAIVALADDGFCRRSELARSFPRLESRDLRRALRRAVAQGLVIERRGPDGAFHLAVSSEGWNRHRNG |
Ga0307285_10000004186 | F016854 | GAG | MAGSRLKTLPKPGEVWLSCPPYLMMARIVAVDLDGESPVVSYELHDDDGSLLQAVEHAALDRGWWRTFQRLEPRFG |
Ga0307285_1000000420 | F056088 | AGG | MRLNEAAVFKWVVIVGIAGAVVVAVTLLTRPLVGSLLGLAIVIAGGVYAYRWARERWG |
Ga0307285_10000004215 | F031439 | AGG | MYMIPIVLIILLALIAVAWSPIFALIFFAIGFIGFLAYAGLSRRSDEKLAPPEQPGRQPQHEAQGDTGMWGERKPS |
Ga0307285_1000000427 | F003627 | N/A | MDRENARRQMRAGLVAGGIAAGIFALSFVAAFLYIAQ |
Ga0307285_1000000473 | F064160 | N/A | LQDYAGVKLLLVPLAILAFVLFLLLLGAIGLAISFAVLYVFGRAWRLVSGGPRRDR |
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