Scaffold Ga0307319_10047850

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307319_10047850

Scaffold Ga0307319_10047850

Overview

Basic Information
Taxon OID	3300028722 Open in IMG/M
Scaffold ID	Ga0307319_10047850 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1340
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	10
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020388	Metagenome / Metatranscriptome	224	Y
F077589	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307319_100478501	F077589	N/A	FDPQSVINAVSNPPTDHRTVTPAQPLSVYVGLRAKL
Ga0307319_100478502	F020388	GGTGG	VREASLRRRLTKVSRKTAGPVNKATPIKTYAHALPYVLSWSVLALLTIVGMTRLPTALYTPIDGDWAKWNVEAIFHFGKVFDLSPHSMLAGMGSMYFPNLPWLNPGALALALPIEDRAKDIVSYAIYAAELAASIVLLARVIGFSWLIATVAAQIYLYVLFPPFSEAFQTYNWFSLAPYYAHVTAVLNVAMVFILMCGSAPDWRYNLMLGAGFFALFISGFLSAPFTFIFAMPAYVVIGVVLVMTRRPSGTEWAWKMALLGSCLIFVFTSDLIDYFLGTVVTVARTPSAPIAWDKLLSIDAWLHLFRDHSLCAHPRLLLCVNDRGAWLLI

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