NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307316_10194728

Scaffold Ga0307316_10194728


Overview

Basic Information
Taxon OID3300028755 Open in IMG/M
Scaffold IDGa0307316_10194728 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)730
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)10
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023920Metagenome208Y
F067977Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307316_101947281F023920AGGAMNEHCTPEANRNTFDGDAISRADREFLASLSDHPLVQHPLYSIPPPPRPNYDGCTTIDERAEAQRACFPAALDWMLVNYAYYTGAFIGKGGIISLVDGEICSIASLRSFMQPYTIVEEGPRGGLKKTSVVDVWMMHPQRAQIDKVQTRPDRPRPTFVEDGLTVFNRYWPPAHPTSGGEIATFKTF
Ga0307316_101947282F067977N/AGRFHDRTRVRTDSHLINWGRYGLGIYDTMTETTWHRRERAPSARFEFLGQLQARNPFR
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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