NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307515_10003371

Scaffold Ga0307515_10003371


Overview

Basic Information
Taxon OID3300028794 Open in IMG/M
Scaffold IDGa0307515_10003371 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33703
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Washington
CoordinatesLat. (o)46.6992Long. (o)-120.899Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004318Metagenome / Metatranscriptome443Y
F042656Metagenome / Metatranscriptome158Y
F061416Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0307515_100033712F061416AGGAMHFKVTQEGVKLLTPIDRIAYTGLFLLGRALKWFKPYLTEIQVNGIITTN
Ga0307515_100033713F004318GGAGMRIFRVLSSLGSSIVSYIVSYLGLGLVLGIKSVLDLGLGSLSILFIIGYQFF
Ga0307515_100033714F042656GGAVDIGRNLISVEFGGILRLVESGGFLRRRVDISGNLRLVDLSGFPRF
Ga0307515_100033715F004318GGAGMRIFRVPSSLRLSIVFYLSLGSVLGTELVLDLGLGSLRILFIVEY

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