Scaffold Ga0307281_10007766

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307281_10007766

Scaffold Ga0307281_10007766

Overview

Basic Information
Taxon OID	3300028803 Open in IMG/M
Scaffold ID	Ga0307281_10007766 Open in IMG/M
Source Dataset Name	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_120
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2959
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location Name	USA: Colorado
Coordinates	Lat. (^o)	38.9206	Long. (^o)	-106.9489	Alt. (m)		Depth (m)	20
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034330	Metagenome / Metatranscriptome	175	Y
F035656	Metagenome / Metatranscriptome	171	Y
F098572	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307281_100077661	F035656	GGAG	VTHRQGRIWIRRTGSAYDVMFAPTGNGEFRIATAAGLRAFLWEATIPAERIDEALDALRTDTEHEIPNVRLTLERMSKLGL
Ga0307281_100077663	F034330	AGGAGG	VRAVETLTLLLAATVLFMWAIFAHPTPEERARLHDSMGASTGIAWR
Ga0307281_100077665	F098572	GGA	MNAGPITPPMIGIAMGGEVTGFLHILRVEAPVDPVTAEYRIAFAPVGGRFRSRHVMVQGLDRLTAFLRQAHVPTPEIEQAWRALATRRIHSIRHVGLTSAELAALGL

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