NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247610_10032524

Scaffold Ga0247610_10032524


Overview

Basic Information
Taxon OID3300028833 Open in IMG/M
Scaffold IDGa0247610_10032524 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1742 DNA GHGhigh gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5091
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048027Metagenome / Metatranscriptome148Y
F082826Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0247610_100325242F082826N/AMQKYIIEMNYNASIVVEVEANDEGEALDKARDKAEDADIRQFTLGKENESKILRRD
Ga0247610_100325244F048027AGGAGMAKTETKKEKFSLDTRVRLVAENNGGKGVKMPVWFNLPQHKALRQQHIDICKKLVELSAANGNYPITYLVYFAVGKNAHRKEVFEDGYTKIDEKKAEKIFSWLKIAAKYHKNDKLFRNPNAAHALCRFYDKFSTKTKDFKAALERMESNPKIDLKNAKALVEGMGIGKQSKEAELEAAEVAMEPSVANA
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