NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307308_10629741

Scaffold Ga0307308_10629741


Overview

Basic Information
Taxon OID3300028884 Open in IMG/M
Scaffold IDGa0307308_10629741 Open in IMG/M
Source Dataset NameSoil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_195
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)514
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004396Metagenome / Metatranscriptome440Y
F064898Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307308_106297411F064898N/ARRVRSAPQDDLAREYLSNAYQQKAELLSAMMDRGGSVH
Ga0307308_106297412F004396GGAGMGTGMLGLASLRLDVKRSLLPVLGAAAFLCSSLPATAAAQHLEKHFAVNNRPVVVIHNVANGRIEVKSWKNAEVDVVASQTSGKIGFEMEQAGDRIDVTANILDASAQPRELEASLQLTVPEETELQLKTET

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