NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265300_10000274

Scaffold Ga0265300_10000274


Overview

Basic Information
Taxon OID3300028914 Open in IMG/M
Scaffold IDGa0265300_10000274 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)54765
Total Scaffold Genes119 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (27.73%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F056169Metagenome / Metatranscriptome138Y
F063247Metagenome / Metatranscriptome129Y
F082008Metagenome / Metatranscriptome113Y
F091120Metagenome / Metatranscriptome107Y
F093056Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0265300_1000027422F063247AGTAGMEHTFPYKTTIEIDCDPFTGMGRQQDHYEHICKNIVGCEPQPRISAFFGCWTWPITYQTKEQQDKTAEFLKGLYNQGLCRYASW
Ga0265300_1000027425F056169GAGMTPREAIEISRKYNLEAEIRQELASGLSPEQALEEWDIV
Ga0265300_1000027450F082008N/AMGKSKGLLVVREKAALKRLEAAYENFKAAGEDKKPWTSTRNGRTIFHKGRTFNEECERMKKEIANLKANITKNS
Ga0265300_1000027484F093056N/AMTYKRYEYWSSKGKVWTDWFLWNSDYKPELQMNDRRIINRLRNEYEERN
Ga0265300_1000027495F091120N/AMHDLKTIVKGKADLDCVKSGGIAVYHITVEDGTIYSLDIDLSNKHDVGETATFMSHYDKALILMRWIRRALDNKELYKIS
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