NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168978_101467

Scaffold Ga0168978_101467


Overview

Basic Information
Taxon OID3300029109 Open in IMG/M
Scaffold IDGa0168978_101467 Open in IMG/M
Source Dataset NameHuman oral microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002637-96
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9500
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Propionibacteriaceae → Arachnia → Arachnia propionica(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Oral Cavity → Unclassified → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location NameChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092231Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0168978_1014678F092231AGGAGMIIFAPQEFITWSNTLIQFPWPIQVDDFASYAERLGWTPTPRPTWFNVYANNDTRNVILGDDRSGNVRDLFLSMARNEAEDDEGAVELNDHFVSCVAAGRKAWGEPFLLEAGDGPSVTWRFPGDMFAQVISGRWSVLFDFFTPEGRRQFL

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