Scaffold Ga0168037_103919

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168037_103919

Scaffold Ga0168037_103919

Overview

Basic Information
Taxon OID	3300029169 Open in IMG/M
Scaffold ID	Ga0168037_103919 Open in IMG/M
Source Dataset Name	Aquariaum water viral communities from Chicago, USA - Oceanarium - OC1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	974
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Source Dataset Sampling Location
Location Name	USA: Chicago
Coordinates	Lat. (^o)	41.87	Long. (^o)	-87.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F034549	Metagenome	174	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168037_1039191	F034549	N/A	VSQSRSNLEVMQDQAVEEQVPEQKLASPIKYDAYAGFVAPEDQNEKASQSDLLYWIADNEISEEVQQVGKIVGEAAAVIGGATVGLGLPDVKKTIQERKAIGKSPITGTLAKGFYRLGSPLATAAFTIPQALDEDTTLKDIGTDPLNYLGLATMETLGKRAGTVAAPAAAQATGIMGALKNYGALKNVGEAIPGKLSTALRLGLNPRVIAGASRFLGIPGLIASTGYTLYDYLSNKNKEA

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