NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Sample 3300029169

3300029169: Aquariaum water viral communities from Chicago, USA - Oceanarium - OC1



Overview

Basic Information
IMG/M Taxon OID3300029169 Open in IMG/M
GOLD Reference
(Study | Sequencing Project | Analysis Project)		Gs0127413 | Gp0192423 | Ga0168037
Sample NameAquariaum water viral communities from Chicago, USA - Oceanarium - OC1
Sequencing StatusPermanent Draft
Sequencing CenterMichigan State University
Published?N
Use PolicyOpen

Dataset Contents
Total Genome Size19704331
Sequencing Scaffolds14
Novel Protein Genes18
Associated Families18

Dataset Phylogeny
Taxonomy GroupsNumber of Scaffolds
Not Available7
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.1
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage6

Ecosystem and Geography

Ecosystem Assignment (GOLD)
NameAquariaum Water Viral Communities From Chicago, Usa
TypeEnvironmental
TaxonomyEnvironmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Alternative Ecosystem Assignments
Environment Ontology (ENVO)Unclassified
Earth Microbiome Project Ontology (EMPO)na → na → na

Location Information
LocationUSA: Chicago
CoordinatesLat. (o)41.87Long. (o)-87.61Alt. (m)N/ADepth (m)N/A
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004759Metagenome / Metatranscriptome424Y
F005946Metagenome / Metatranscriptome385Y
F006111Metagenome / Metatranscriptome381N
F009320Metagenome / Metatranscriptome319Y
F011474Metagenome / Metatranscriptome290N
F013635Metagenome / Metatranscriptome269Y
F017630Metagenome / Metatranscriptome239Y
F021244Metagenome / Metatranscriptome219Y
F025283Metagenome / Metatranscriptome202Y
F026223Metagenome / Metatranscriptome198Y
F026442Metagenome / Metatranscriptome198Y
F031848Metagenome / Metatranscriptome181N
F034549Metagenome174N
F042792Metagenome157Y
F051789Metagenome143Y
F062578Metagenome130N
F081076Metagenome / Metatranscriptome114Y
F102529Metagenome101N

Associated Scaffolds

ScaffoldTaxonomyLengthIMG/M Link
Ga0168037_103919Not Available974Open in IMG/M
Ga0168037_106524All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.754Open in IMG/M
Ga0168037_107702Not Available697Open in IMG/M
Ga0168037_108297Not Available671Open in IMG/M
Ga0168037_108595Not Available660Open in IMG/M
Ga0168037_108798All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage652Open in IMG/M
Ga0168037_109268All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage635Open in IMG/M
Ga0168037_109270Not Available635Open in IMG/M
Ga0168037_109737All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage618Open in IMG/M
Ga0168037_110828Not Available580Open in IMG/M
Ga0168037_111037All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage572Open in IMG/M
Ga0168037_111828All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage546Open in IMG/M
Ga0168037_113017Not Available507Open in IMG/M
Ga0168037_113080All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage505Open in IMG/M

Sequences

Scaffold IDProtein IDFamilySequence
Ga0168037_103919Ga0168037_1039191F034549VSQSRSNLEVMQDQAVEEQVPEQKLASPIKYDAYAGFVAPEDQNEKASQSDLLYWIADNEISEEVQQVGKIVGEAAAVIGGATVGLGLPDVKKTIQERKAIGKSPITGTLAKGFYRLGSPLATAAFTIPQALDEDTTLKDIGTDPLNYLGLATMETLGKRAGTVAAPAAAQATGIMGALKNYGALKNVGEAIPGKLSTALRLGLNPRVIAGASRFLGIPGLIASTGYTLYDYLSNKNKEA
Ga0168037_106524Ga0168037_1065241F102529VSQSRSWAAVVTLGYGYLRGELRKHRQVTCDLLVKIAKGSIKVIETDEFIEFKEV
Ga0168037_106653Ga0168037_1066532F004759MDKKDLAQDKKMIKSAVGKHEKNMHPGKKPTKLAKGGKTNEMMLQYGRGLAKVANQGK
Ga0168037_107702Ga0168037_1077021F013635MFNLKEGTKFNITYFAKKYGKFITRAGVWTEKSKEWISKKNETLFTYFDLDNEGYRTQADRDWE
Ga0168037_108297Ga0168037_1082972F042792MTHKQQDAIDGIMDNFKFEQVRQVMELLNWEWQDAEEGIPTVPELRKQARRLLKMSFKEKTDVSTGGFHVKYESDADGSEFIQLIFAVEEWYEDVEKDLAE
Ga0168037_108595Ga0168037_1085951F081076FPSHDRAGTVGASFAADMAAFISMEKSLVDVSTIIKNPEDVAMPKDISAQLMIMFQAVDVLATQDELTKFMSFVERIPSSEVQGVFFTMMMRNTKAIRLARNNAKIAEWAKNNHELF
Ga0168037_108798Ga0168037_1087982F005946FPSHDPALSGASAAQLYASTPPIENAILVVSVEIFQSITAPGNQIMSDTFQPQPFILGRSLTNRVVGLLGPFLDVEAMCQ
Ga0168037_109268Ga0168037_1092681F006111MISYQALTDEIIAFYNAHLQVKKVGTDFKEQLFNFATKDEKYPLVYIVPVDVIASDNVNLFNLEIYCFDIIQKDRANITTILSDCQQILNDLYLNYTFSLTDTDFDVEGFPTFTPLNNDLLDYAAGWLMNITFKLRS
Ga0168037_109270Ga0168037_1092701F021244FNLTDFTVRPAATYAGTVAAVVGAVNQRTAGVSGGNMFGVYAQTSFSNNPSSTISGLNTAVYGVVDCGSSTNIGAAYGATFDFAQFAGTRASRPKAFIAFGEESSATNPCLNLFDIGRLGKNVAAGLALTTAVTPTVDGGQIRVLVNGAIRYIKLFSTSA
Ga0168037_109737Ga0168037_1097371F009320FPVTIYGKVTNHKSYGINIMRLGMERGTFKINESCVDFLDESRNYAIDEAGRFSDPDDHIDSARIGILALIQGHGESMVSRANAFQYRRPTAVDGKVQRI
Ga0168037_109737Ga0168037_1097372F025283MLDRQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEF
Ga0168037_110828Ga0168037_1108281F011474VSQSRSIFDIVVKEELASCTSAEDMLIVLARNYDLRQPLGGLTKAAFTIGLRTAVGMLRPEVNANANYKAKELKDTRFPHLKIFR
Ga0168037_111037Ga0168037_1110372F026442MSYAAVEMKIIQWSEARKIIPNSTPEVQLLKAMSELDRDWE
Ga0168037_111461Ga0168037_1114611F031848MSDLFPDTGGNLSPRLKWQEEKRIKTLRREDGKWVAFKSETSHSFTDEVELDAVI
Ga0168037_111828Ga0168037_1118282F051789MKIKTIAHIHFQKYSWEEKGEYRVASFKLDDNENRTYVGEQEIEIEVPENYDPRAQQIAALEALKQKVMADYHKSVMEINERIGKLLALEAT
Ga0168037_113017Ga0168037_1130171F026223NSNNNLGADMKHEDVKKDKPMMETVAKKAVKGHEKRMHGMKAGGVTTMDMKKMGRNLARVANQGMRKTAGRGR
Ga0168037_113080Ga0168037_1130802F062578MATTVITGRDISLSFTGGTDIEAQALSAVLTKTNLR
Ga0168037_113125Ga0168037_1131251F017630MTKPLHVINWQGKEYRIPFDVNLNLDAKDKLIEVPNRFSGAIDMGSNKTTGS
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