NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168029_102107

Scaffold Ga0168029_102107


Overview

Basic Information
Taxon OID3300029174 Open in IMG/M
Scaffold IDGa0168029_102107 Open in IMG/M
Source Dataset NameAquariaum water viral communities from Chicago, USA - Amazon Rising - AZ1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1707
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Source Dataset Sampling Location
Location NameUSA: Chicago
CoordinatesLat. (o)41.87Long. (o)-87.61Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024268Metagenome / Metatranscriptome206Y

Sequences

Protein IDFamilyRBSSequence
Ga0168029_1021072F024268AGGAGGMTELYSGTEAVSTTEHSLTTDTAGPDADTTPGVFQLFLDLSDMVAGDQLQIRLYEKVRSGDTQRVVEEWILTGPQSKPNFTLPAFALMHGWDFTLDALAGTITVNWSIRQIG
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