NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135212_1029733

Scaffold Ga0135212_1029733


Overview

Basic Information
Taxon OID3300029306 Open in IMG/M
Scaffold IDGa0135212_1029733 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SCH3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)580
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029404Metagenome188N
F066135Metagenome127N
F105877Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0135212_10297331F105877N/ANHENEMLKENIFDMWVEYLELDGWPKGDLETYREAARRTESEWLEMN
Ga0135212_10297332F066135GGAGMNGLRIHDVNNIKVKSVDFDEFKTIVVTVTDQANKDFELTLFTGKGFTPNLEVEHDNG
Ga0135212_10297333F029404GGAGGMTTVDFVEIELGGDKWKITWDTRTRKKIKTTGEKAGLVHTIYSLKNLTPAQAYDIAMLQLEWLKKDQVYVI
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