NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243320_1000831

Scaffold Ga0243320_1000831


Overview

Basic Information
Taxon OID3300029337 Open in IMG/M
Scaffold IDGa0243320_1000831 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-22_Run5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterZhejiang University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34125
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (26.83%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location NameChina: Hangzhou
CoordinatesLat. (o)30.0Long. (o)120.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055775Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0243320_100083130F055775N/AMAQIAQQDNLVIEVTTTAAALDGATKKKLIECIEGGTITDVILVTKEVEKKISHARIVSWLVDTTGDSPKYTIDIINANSGAVAAIALN
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