NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247043_1086854

Scaffold Ga0247043_1086854


Overview

Basic Information
Taxon OID3300029895 Open in IMG/M
Scaffold IDGa0247043_1086854 Open in IMG/M
Source Dataset NameCryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3a
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDMAC, Technical University of Denmark
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)530
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location NameGreenland: Tasiilaq
CoordinatesLat. (o)65.38Long. (o)-38.53Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052031Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0247043_10868542F052031GGAGMTLDLRATCPATTEFHAEIVQFVFRSAVSSGLLKKARAMLDAAPPELAESFEQAVRTAGLAS
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