NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247044_1026706

Scaffold Ga0247044_1026706


Overview

Basic Information
Taxon OID3300029896 Open in IMG/M
Scaffold IDGa0247044_1026706 Open in IMG/M
Source Dataset NameCryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3b
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDMAC, Technical University of Denmark
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1604
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet

Source Dataset Sampling Location
Location NameGreenland: Tasiilaq
CoordinatesLat. (o)65.38Long. (o)-38.53Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036775Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0247044_10267062F036775AGGAGGMYDQLDQVPQLSEIEDRPGQRRRIGLSDPVFYAGCFALALLPASLAGILLHDFIGEPMLFLAAVVLTTWVVTAIALAWIAGPMLRCRAIVAAGGLVSVAMCSLFLLE

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