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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| IMG/M Taxon OID | 3300029896 Open in IMG/M |
| GOLD Reference (Study | Sequencing Project | Analysis Project) | Gs0133355 | Gp0289629 | Ga0247044 |
| Sample Name | Cryconite microbial communities from ice sheet in Tasiilaq, Greenland - TAS_L-C3b |
| Sequencing Status | Permanent Draft |
| Sequencing Center | DMAC, Technical University of Denmark |
| Published? | N |
| Use Policy | Open |
| Dataset Contents | |
|---|---|
| Total Genome Size | 214289798 |
| Sequencing Scaffolds | 33 |
| Novel Protein Genes | 34 |
| Associated Families | 31 |
| Dataset Phylogeny | |
|---|---|
| Taxonomy Groups | Number of Scaffolds |
| All Organisms → cellular organisms → Bacteria → Proteobacteria | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 4 |
| Not Available | 16 |
| All Organisms → cellular organisms → Bacteria | 3 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 2 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. Root1237 | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium | 1 |
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica | 1 |
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 1 |
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii | 1 |
| Ecosystem Assignment (GOLD) | |
|---|---|
| Name | Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Type | Environmental |
| Taxonomy | Environmental → Aquatic → Freshwater → Ice → Unclassified → Cryconite → Cryconite Microbial Communities Around The Greenland Ice Sheet |
| Alternative Ecosystem Assignments | |
|---|---|
| Environment Ontology (ENVO) | aquatic biome → cryoconite hole → cryoconite deposit |
| Earth Microbiome Project Ontology (EMPO) | Unclassified |
| Location Information | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location | Greenland: Tasiilaq | |||||||
| Coordinates | Lat. (o) | 65.38 | Long. (o) | -38.53 | Alt. (m) | N/A | Depth (m) | N/A | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002238 | Metagenome / Metatranscriptome | 579 | Y |
| F012876 | Metagenome / Metatranscriptome | 276 | Y |
| F023377 | Metagenome / Metatranscriptome | 210 | Y |
| F023612 | Metagenome / Metatranscriptome | 209 | Y |
| F027546 | Metagenome / Metatranscriptome | 194 | Y |
| F028856 | Metagenome / Metatranscriptome | 190 | Y |
| F031516 | Metagenome / Metatranscriptome | 182 | Y |
| F035339 | Metagenome / Metatranscriptome | 172 | Y |
| F036775 | Metagenome / Metatranscriptome | 169 | Y |
| F036776 | Metagenome / Metatranscriptome | 169 | Y |
| F037916 | Metagenome | 167 | Y |
| F038474 | Metagenome / Metatranscriptome | 166 | Y |
| F040130 | Metagenome / Metatranscriptome | 162 | Y |
| F040670 | Metagenome / Metatranscriptome | 161 | Y |
| F040712 | Metagenome | 161 | Y |
| F044583 | Metagenome / Metatranscriptome | 154 | Y |
| F045483 | Metagenome | 152 | N |
| F046787 | Metagenome | 150 | Y |
| F058198 | Metagenome / Metatranscriptome | 135 | Y |
| F060114 | Metagenome / Metatranscriptome | 133 | Y |
| F062395 | Metagenome / Metatranscriptome | 130 | Y |
| F070201 | Metagenome / Metatranscriptome | 123 | Y |
| F073010 | Metagenome / Metatranscriptome | 120 | Y |
| F076649 | Metagenome / Metatranscriptome | 118 | Y |
| F077376 | Metagenome / Metatranscriptome | 117 | Y |
| F077506 | Metagenome / Metatranscriptome | 117 | Y |
| F078153 | Metagenome / Metatranscriptome | 116 | Y |
| F079536 | Metagenome / Metatranscriptome | 115 | Y |
| F083559 | Metagenome | 112 | Y |
| F099381 | Metagenome / Metatranscriptome | 103 | Y |
| F101808 | Metagenome / Metatranscriptome | 102 | Y |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| Ga0247044_1010470 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 3551 | Open in IMG/M |
| Ga0247044_1016548 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 2456 | Open in IMG/M |
| Ga0247044_1024871 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1715 | Open in IMG/M |
| Ga0247044_1025465 | All Organisms → cellular organisms → Bacteria → Proteobacteria | 1677 | Open in IMG/M |
| Ga0247044_1025473 | Not Available | 1676 | Open in IMG/M |
| Ga0247044_1026706 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 1604 | Open in IMG/M |
| Ga0247044_1026816 | All Organisms → cellular organisms → Bacteria | 1598 | Open in IMG/M |
| Ga0247044_1029112 | Not Available | 1482 | Open in IMG/M |
| Ga0247044_1029989 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 1442 | Open in IMG/M |
| Ga0247044_1030244 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Pelomonas → unclassified Pelomonas → Pelomonas sp. Root1237 | 1430 | Open in IMG/M |
| Ga0247044_1031600 | All Organisms → cellular organisms → Bacteria | 1372 | Open in IMG/M |
| Ga0247044_1038555 | Not Available | 1134 | Open in IMG/M |
| Ga0247044_1039922 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Cryobacterium | 1096 | Open in IMG/M |
| Ga0247044_1040063 | Not Available | 1093 | Open in IMG/M |
| Ga0247044_1043025 | Not Available | 1021 | Open in IMG/M |
| Ga0247044_1045700 | All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Mandibulata → Pancrustacea → Hexapoda → Insecta → Dicondylia → Pterygota → Palaeoptera → Ephemeroptera → Furcatergalia → Scapphodonta → Ephemeridae → Ephemera → Ephemera danica | 964 | Open in IMG/M |
| Ga0247044_1049064 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales | 903 | Open in IMG/M |
| Ga0247044_1050277 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium | 883 | Open in IMG/M |
| Ga0247044_1051101 | Not Available | 869 | Open in IMG/M |
| Ga0247044_1052095 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae | 853 | Open in IMG/M |
| Ga0247044_1057414 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | 779 | Open in IMG/M |
| Ga0247044_1059759 | All Organisms → cellular organisms → Bacteria | 751 | Open in IMG/M |
| Ga0247044_1062448 | Not Available | 721 | Open in IMG/M |
| Ga0247044_1064077 | Not Available | 705 | Open in IMG/M |
| Ga0247044_1064353 | Not Available | 702 | Open in IMG/M |
| Ga0247044_1066219 | Not Available | 684 | Open in IMG/M |
| Ga0247044_1067215 | Not Available | 675 | Open in IMG/M |
| Ga0247044_1069415 | All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Nevskiales → Steroidobacteraceae → Steroidobacter → Steroidobacter gossypii | 656 | Open in IMG/M |
| Ga0247044_1080014 | Not Available | 579 | Open in IMG/M |
| Ga0247044_1081237 | Not Available | 572 | Open in IMG/M |
| Ga0247044_1083542 | Not Available | 558 | Open in IMG/M |
| Ga0247044_1084511 | Not Available | 552 | Open in IMG/M |
| Ga0247044_1093189 | Not Available | 507 | Open in IMG/M |
| Scaffold ID | Protein ID | Family | Sequence |
|---|---|---|---|
| Ga0247044_1010470 | Ga0247044_10104703 | F023377 | MVASLAFVGIAAQAMTVSYQCTGRRLLTAELSPRQGQLHFEGKDWTVTRVPGGREARYLNKKAGVEVVTQGRTMTFTHDGEALQCYLYSDALPGDAPRKTN |
| Ga0247044_1016548 | Ga0247044_10165485 | F040670 | MNPLVNRNTATSDIGRPPPADAPMQVLPWAEDSSRSIGSEDANTRYQGDLFLPGWLKIELQPTAEQGPGA |
| Ga0247044_1024871 | Ga0247044_10248711 | F027546 | MKVAGESEPAPWQPLGERVARPKPLQPEWQPLGHAPCIEVNRQGQLRTNLPLPK |
| Ga0247044_1025465 | Ga0247044_10254652 | F023612 | MGHSKSTRRIMRPALQAAAMASLVASAMGVQAEGLTLKAQESSYGNHATAEYALTNFRAPANAIRLFGDYYFFDPSQSTLGPVLGSLVGGFRASTGVVGLAQPMTLYEARPDSLQNLPYIGLGYSHLLFNSQLSLNADFGLAEQNHGRGLFSSASSLDDVTSQLRWAPLMAVNVRYSF |
| Ga0247044_1025473 | Ga0247044_10254731 | F083559 | MNSVVQPEIMLEPHGSHKMDIIPHTVREFGVEARKPGKAWEAAFNGPIQSWADPLTGQMLYGVTVRLSRLKDPVSRELYSTNLLFYMSETEMCGMHNVYEMARRFPFTRIRGPRTILPHCPQRVGRLWYDANPEGVIMEDLRLTPATLPDGRSGFFVTGQGYRGKVMFPDGRFVHDVGVYGGYLDPQERPGQLELQHLFGGIEFGATLTDDDEGRLLAELGEGVWVKGITGNVAEEMRVESYKNSVKLPCLDGRKTLIGARSMSETKQITYFESLSADGLSGFRMGGVIDGLNRALGLEIWDRVHRVGLGSNFVPCPELDGYIGLIHVVLEKNNPAFPETLDAVHPGINEQYEGWVVWLKFDADGKPVIKACVRAITPDDVPVGYEGAGELFDTKRVAFPMSLYRIGESLSVGYG |
| Ga0247044_1026706 | Ga0247044_10267062 | F036775 | MYDQLDQVPQLSEIEDRPGQRRRIGLSDPVFYAGCFALALLPASLAGILLHDFIGEPMLFLAAVVLTTWVVTAIALAWIAGPMLRCRAIVAAGGLVSVAMCSLFLLE |
| Ga0247044_1026816 | Ga0247044_10268163 | F079536 | KQLGEVTVDASRLEHLAVEIARSLKIDASTPDAVAVLRRADAVPPPWSTVTSKDIAAWASSTGRLLEIRDRMFEASGGSRFAGSRGDTIATESADGTVFPADEEYLARYLKRLERQLAAGAELQSRLDYHDENGQRWPLVTLYSQRDSGENTEQPPMRLPAEWTRWLSA |
| Ga0247044_1029112 | Ga0247044_10291121 | F038474 | MSTHSQPCEYEECHCVVVGPVEGASYCSDVCRERDNQSEEMEVSCECGHSPCDSE |
| Ga0247044_1029989 | Ga0247044_10299893 | F062395 | LTRVPAPAPRARLVASSHVHCETRTAYRYEATWDVEGPLLTWKATVSLPGRRWSLAGGTPEWTGGNEAKAVRDDVARSIDGLEA |
| Ga0247044_1030244 | Ga0247044_10302443 | F044583 | MSDLLTPGQEILRARIRFALRRATGFVFDIDQMLRKPEMRTRRIGLWRDVADDDLSSLLDQLETEFQADFDDPDDAERTVVPRRADVHGPHP |
| Ga0247044_1031600 | Ga0247044_10316001 | F002238 | MLDDETPEFRRGWEAAVLAARYWHEDKSKQTLVLSRRSRFPKMLERDAEVHKYSAGMMATLMPEDP |
| Ga0247044_1038498 | Ga0247044_10384981 | F099381 | MSEDFKPGTRPLLRLAGLDAVRAFVSRAEETHVIWTAVVALMLRLYQEPDAKVRRESGPTDSQVVAALRVVLGENFGGESADYTSWALVRYGCRQKPTMAALHPWEGLMFEWQQRRASAPRIALMLRDAGFDKPLKAALLESLDGWVTDPVKSLGEATEIIEALFSERLVSYNLHDDGTTPAHDTLFGGLVASLLPQGRLQQLRQTLVRGDERATWHVEYTFEDETAVFEATASGSALDVDSVMGGVDALMERIGRPERVYRLAPGRYNNGETGVFVLADASRFPEIAWRLRLPLLERLVDALDPDVICLQETKVPDELFPDAAPAAIGYPYYAR |
| Ga0247044_1038555 | Ga0247044_10385551 | F012876 | MTKTTTQAAAAVLSALMSLAIIAGMNGLATTQYARADSLAMAPYGLTHVALQHVTIVGRRNT |
| Ga0247044_1039922 | Ga0247044_10399221 | F045483 | VTETWRQSTPTAKPRRLVSGLSVLGFSLLVLTGCAVPGGYDVNSLHLQPEAALVYPGSTDVHTNYYNGSPGNYVSKGAVASIGNLATTIHTQLEVLAFFSQTLAADGWTQNGKSDQETTPEGLPASTISWGKQSLH |
| Ga0247044_1040063 | Ga0247044_10400632 | F077376 | TGDEEKAANATHWAKFRRAKLISVSRRTGEAAPAPAAGKDSILITAQGRAGQCETNTRPGTHDPEALAALLVRTLDIQDGMGVVLADFDNEEFAADVVSRIAALGRAVTCTGQVANFAFSARVWARSSKS |
| Ga0247044_1043025 | Ga0247044_10430251 | F073010 | MALNRWLLRPRVMGWIAAAVFLCILLFQLPASPAASGHFVAFTGAAPFDERPAGYTLSGVLAAFRQLGPQGLADYEAYRTVDLVFPWLLCALVAAVMLRLDAARATMWPWLAAIADTIENALQWRILVTRDDLSPELVQWASAATQIKFMLYALMLLMLVAVGARMLWRQHRAPR |
| Ga0247044_1045700 | Ga0247044_10457001 | F023612 | MGHSHSTGRRARPRLQWTVAASLATSMIGAQAEGLTLRLQESSYGSNSSAEYALTNYRAPANSIRLFGDYYFFDPAQSNGGPMTSSLMGGFRASTGVVGLAQPMSLYETRPDPLQNLPYIGLGYSHLYLNSQLSLNADFGLASQSNHGRGLFGSTSALDDVTNQLRWAPVMAVNVRYSF |
| Ga0247044_1049064 | Ga0247044_10490642 | F070201 | MRTMPLQILTWGTITAAVGSAAWLASADQAAVFCSFGYRATSRAMGLDIPLPTEPTRAGPSAKLPGSSAARQQLQANAS |
| Ga0247044_1050277 | Ga0247044_10502771 | F058198 | MTALMLALIALLALAVRTVQLRLRLAGWQPLWRFGTGPCTVELRRHAELTRLGADSLEYPQPREFRVLSLRVGGIPVWSQVAIVGLPAAADERIDHIPATEFDPLFDPQFRLGWPQQRVRVAARAH |
| Ga0247044_1051101 | Ga0247044_10511012 | F036776 | MNSIVRMLAVYAGLSLLLCGFTHLEWSPLQPNGFGQWFALFLLIFPAAAAAEFLGERLLGKRGTLDFQETRSHTDCPWSRVAMSVLVVVVTIGVVMGAAWWLSHPAAAVY |
| Ga0247044_1052095 | Ga0247044_10520952 | F040130 | VKGVLTRTLAILAGIVLGMLIVSGSSPWRELFRKPEPVPSAPIQRERAPDQRV |
| Ga0247044_1057414 | Ga0247044_10574143 | F046787 | MSESDKPLRQQIDEGMEAIRHQLERLREGPTLGEPSDDRTLIADLEAEYQALKEARGSVGAHDRAPDEFDCDTRD |
| Ga0247044_1059759 | Ga0247044_10597592 | F037916 | RAPRKDDAETRHKAEIDRMRAVIAEITAENLELKKRI |
| Ga0247044_1062448 | Ga0247044_10624481 | F045483 | RRQSTPLAKPRRLFSGLSVLGLSLFVLTGCVVPGGYDVNSLHLLPESALVYPGSTDVHTNDYGGSPGNYVSRGAVAATGKSATTVHTQLEVLAYFSQTLAADGWMKTREDDTATTPEGFRAKDISWVKNSLHLSYLVEVWTVGETTQYLTQLNANE |
| Ga0247044_1064077 | Ga0247044_10640772 | F028856 | MDNFSAGQAHDAGFESGMLSIADPFDLHADDNLGDEAPFPSTWQVLASGDAPND |
| Ga0247044_1064353 | Ga0247044_10643531 | F045483 | MAKPRRLFSGLSVLGLSLFVLTGCAVPGGYDVNSLHLLPEAALVYPGSADVHTNDYGGSPGNYVSKGAVAVTGKSATTVHTQLEVLAYFSKTLAAGGWTQTGADDTATTPEGFRAKGISWVKNSLHLSYLVEVWTVGET |
| Ga0247044_1066219 | Ga0247044_10662192 | F035339 | MPTTGVELTLAQLRRDRVLLWCWLPVGGLALLFVVKGWTAVAGTPPPALFTVLDIGWIAVTFSLIARRSMSCCPKCDHRWLRGFPWMSLKKVECGVCGHQMPE |
| Ga0247044_1067215 | Ga0247044_10672151 | F077506 | LERTDRGNATGCRIRDAIRSGIGRCVSQSTRGERVIDLSERTRRISGSRLLEILQTYDAKSVIDPFMGYPAHLNFLKRHGIAVHGGDLVDWFVRAGEGLVVNDLTILRDSEVAEIVEMLPGRIYPIDLFKGWDGVFFTEEQCIYLGVWHSNVHNLRSDGQTGLAIAGLWHVLCYWLQKSKYPDDMADLPPSELAWNYIRETEHLVTQNAQRNTVRRGDFNATLG |
| Ga0247044_1069415 | Ga0247044_10694152 | F101808 | MLTGEQRATTAAMWLTRWQGCEASGVSMAEYARREGFDADAAYRWKRILARDGQIAASKGRSTKTAKRCVAAKFARVALSDAVAPATILLRLVLRNGRRAELEIGAVGDLGDVLSALERC |
| Ga0247044_1080014 | Ga0247044_10800141 | F031516 | MVDNRSNSLSTMLHFDTAQMAAITQAHFFSRVAEFIREQTGVAAYRHAAMDAPLRAALWAPHWPTLRDASEHDAALFMCFLLACATLGVDANRAAEAVRQSSQPEASMKLFLSERGLLRFSAFDVPALTRPGATA |
| Ga0247044_1081237 | Ga0247044_10812371 | F076649 | TTITLPRPATSAFAAARASTQATGNYFHDFAELIVRVRSVKWIEEICDEAFPATSEANRHAYDIWLVDHGSFVDEIEGQFLVIDKYWGEASEQARKEGLTVEQLKAKVDSNRPGLRQEFHGRGTRSFQARCEAYPEILLSPQLDLEKSQADLVRSVRLGPGAQ |
| Ga0247044_1083542 | Ga0247044_10835422 | F078153 | MGWIVFEALLALAVMLAVVWWTFRGRADVAEEDADAPGDER |
| Ga0247044_1084511 | Ga0247044_10845111 | F060114 | MTHPLADILERQRIDNARLAGQIVALEMAVKLLFMQHPNPPALAAFYSKAIDGLLDITLATRMPEEMRDALDQARNGVLEALKSQEQMRRTPQ |
| Ga0247044_1093189 | Ga0247044_10931891 | F040712 | LKATGLRVVNLPHVVDARQHVDPPVRLDAGYLVVDRRAYARITFSRPSDGAAVAAHTTGFATLSGVLRAICAERIGLAGRAAMPGPKRAVELKKMGRWQEVLDASGHVEAPMRARLDAWLRSGRFALFRTALRVFRRF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |